BLASTX nr result
ID: Coptis25_contig00025379
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025379 (686 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat... 99 1e-24 gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 81 7e-19 ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm... 78 1e-18 ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein A... 95 1e-17 gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 94 2e-17 >gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula] Length = 480 Score = 98.6 bits (244), Expect(2) = 1e-24 Identities = 47/116 (40%), Positives = 69/116 (59%) Frame = +3 Query: 231 RNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDFAQ 410 +NF+WSG+ K V+W C+P + GGL I+ +N +L++ LAWQ TAD +A Sbjct: 297 KNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWAA 356 Query: 411 FMRHKYFLRDGEPIKYSTRSSIWSGIKWALEHIEQNYQWNIGDGSKIDVWRHNWSG 578 M H+ FL+ G P+++ SS+W GIK L I N W +G G+ I++W NW G Sbjct: 357 LMHHR-FLKHGTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLG 411 Score = 40.8 bits (94), Expect(2) = 1e-24 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +1 Query: 91 VKICALQWKGKLLSFQRRLVLVKSVLSSIPLHNMAIYRWPAGLIHEAETF 240 +K+ WK LLS R+ LVKS++ + +++ IY WP L+H+ +++ Sbjct: 246 IKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYMWPRRLLHQLDSW 295 >gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis thaliana] Length = 732 Score = 80.9 bits (198), Expect(2) = 7e-19 Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Frame = +3 Query: 228 SRNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDD-F 404 SR+FLW + K+ +++W R CKP SEGGLGIR+ ++MN ALL K+ W+++ + Sbjct: 347 SRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLW 406 Query: 405 AQFMRHKY---FLRDGEPIKY-STRSSIWSGIKWAL-EHIEQNYQWNIGDGSKIDVWRHN 569 A+ MR Y +RDG K S SS W + + E + W IGDG +I W Sbjct: 407 ARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDK 466 Query: 570 W 572 W Sbjct: 467 W 467 Score = 38.9 bits (89), Expect(2) = 7e-19 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = +1 Query: 112 WKGKLLSFQRRLVLVKSVLSSIPLHNMAIYRWP 210 WKG+ LS R+ L K+VLSSIP+H M+ P Sbjct: 304 WKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALP 336 >ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis] gi|223537826|gb|EEF39443.1| conserved hypothetical protein [Ricinus communis] Length = 303 Score = 78.2 bits (191), Expect(2) = 1e-18 Identities = 34/87 (39%), Positives = 52/87 (59%) Frame = +3 Query: 231 RNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDFAQ 410 RNFLW+G+ + K V V W CCKP SEGG+G++RL +N +L ++AW+ + D + Sbjct: 210 RNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYSNDSFVYR 269 Query: 411 FMRHKYFLRDGEPIKYSTRSSIWSGIK 491 F+R +Y + G P S +W I+ Sbjct: 270 FLRSRYLVASGVP----RSSLVWPSIR 292 Score = 40.8 bits (94), Expect(2) = 1e-18 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 112 WKGKLLSFQRRLVLVKSVLSSIPLHNMAIYRWPAGLIHEAE 234 WKG+ L RL L+ SV+ + LH +YRWP+ L+ E Sbjct: 166 WKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIE 206 >ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Brachypodium distachyon] Length = 776 Score = 94.7 bits (234), Expect = 1e-17 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 5/120 (4%) Frame = +3 Query: 228 SRNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDF- 404 +RNFLW K +AW++ +P S+GG+G R + N ALL K AW+++ D F Sbjct: 18 TRNFLWGDEENKRKVHWLAWEKMIQPKSKGGMGFRDMALFNQALLAKQAWRLIDKPDSFC 77 Query: 405 AQFMRHKYF----LRDGEPIKYSTRSSIWSGIKWALEHIEQNYQWNIGDGSKIDVWRHNW 572 A+ ++ KYF L D I+ S S +W GIK L+ +++ Y W IG+G +D+WRHNW Sbjct: 78 ARLIKAKYFPHGNLLDTAVIQSS--SPVWQGIKHGLDLLKKGYIWRIGNGRSVDIWRHNW 135 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 94.0 bits (232), Expect = 2e-17 Identities = 41/113 (36%), Positives = 72/113 (63%) Frame = +3 Query: 240 LWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDFAQFMR 419 ++ G P K V+W C+P SEGGL I+ + +N A ++KLAW +L+++ +A ++ Sbjct: 766 IFRGKP---KVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLK 822 Query: 420 HKYFLRDGEPIKYSTRSSIWSGIKWALEHIEQNYQWNIGDGSKIDVWRHNWSG 578 ++F + G+PI+Y +SS+W G+K + + QN W +G G +I++W +NW G Sbjct: 823 RRFFSQ-GQPIRYFVKSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNWLG 874