BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025379
         (686 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    99   1e-24
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    81   7e-19
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    78   1e-18
ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein A...    95   1e-17
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    94   2e-17

>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 98.6 bits (244), Expect(2) = 1e-24
 Identities = 47/116 (40%), Positives = 69/116 (59%)
 Frame = +3

Query: 231 RNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDFAQ 410
           +NF+WSG+    K   V+W   C+P + GGL I+    +N +L++ LAWQ  TAD  +A 
Sbjct: 297 KNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWAA 356

Query: 411 FMRHKYFLRDGEPIKYSTRSSIWSGIKWALEHIEQNYQWNIGDGSKIDVWRHNWSG 578
            M H+ FL+ G P+++   SS+W GIK  L  I  N  W +G G+ I++W  NW G
Sbjct: 357 LMHHR-FLKHGTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLG 411



 Score = 40.8 bits (94), Expect(2) = 1e-24
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +1

Query: 91  VKICALQWKGKLLSFQRRLVLVKSVLSSIPLHNMAIYRWPAGLIHEAETF 240
           +K+    WK  LLS   R+ LVKS++  + +++  IY WP  L+H+ +++
Sbjct: 246 IKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYMWPRRLLHQLDSW 295


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 80.9 bits (198), Expect(2) = 7e-19
 Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
 Frame = +3

Query: 228 SRNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDD-F 404
           SR+FLW  +    K+ +++W R CKP SEGGLGIR+ ++MN ALL K+ W+++      +
Sbjct: 347 SRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLW 406

Query: 405 AQFMRHKY---FLRDGEPIKY-STRSSIWSGIKWAL-EHIEQNYQWNIGDGSKIDVWRHN 569
           A+ MR  Y    +RDG   K  S  SS W  +   + E +     W IGDG +I  W   
Sbjct: 407 ARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDK 466

Query: 570 W 572
           W
Sbjct: 467 W 467



 Score = 38.9 bits (89), Expect(2) = 7e-19
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +1

Query: 112 WKGKLLSFQRRLVLVKSVLSSIPLHNMAIYRWP 210
           WKG+ LS   R+ L K+VLSSIP+H M+    P
Sbjct: 304 WKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALP 336


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 78.2 bits (191), Expect(2) = 1e-18
 Identities = 34/87 (39%), Positives = 52/87 (59%)
 Frame = +3

Query: 231 RNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDFAQ 410
           RNFLW+G+ +  K V V W  CCKP SEGG+G++RL  +N  +L ++AW+  + D    +
Sbjct: 210 RNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYSNDSFVYR 269

Query: 411 FMRHKYFLRDGEPIKYSTRSSIWSGIK 491
           F+R +Y +  G P      S +W  I+
Sbjct: 270 FLRSRYLVASGVP----RSSLVWPSIR 292



 Score = 40.8 bits (94), Expect(2) = 1e-18
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 112 WKGKLLSFQRRLVLVKSVLSSIPLHNMAIYRWPAGLIHEAE 234
           WKG+ L    RL L+ SV+ +  LH   +YRWP+ L+   E
Sbjct: 166 WKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIE 206


>ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein At1g65750-like
           [Brachypodium distachyon]
          Length = 776

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
 Frame = +3

Query: 228 SRNFLWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDF- 404
           +RNFLW       K   +AW++  +P S+GG+G R +   N ALL K AW+++   D F 
Sbjct: 18  TRNFLWGDEENKRKVHWLAWEKMIQPKSKGGMGFRDMALFNQALLAKQAWRLIDKPDSFC 77

Query: 405 AQFMRHKYF----LRDGEPIKYSTRSSIWSGIKWALEHIEQNYQWNIGDGSKIDVWRHNW 572
           A+ ++ KYF    L D   I+ S  S +W GIK  L+ +++ Y W IG+G  +D+WRHNW
Sbjct: 78  ARLIKAKYFPHGNLLDTAVIQSS--SPVWQGIKHGLDLLKKGYIWRIGNGRSVDIWRHNW 135


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 41/113 (36%), Positives = 72/113 (63%)
 Frame = +3

Query: 240  LWSGNPAISKKVVVAWDRCCKPTSEGGLGIRRLKEMNLALLMKLAWQVLTADDDFAQFMR 419
            ++ G P   K   V+W   C+P SEGGL I+  + +N A ++KLAW +L+++  +A  ++
Sbjct: 766  IFRGKP---KVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLK 822

Query: 420  HKYFLRDGEPIKYSTRSSIWSGIKWALEHIEQNYQWNIGDGSKIDVWRHNWSG 578
             ++F + G+PI+Y  +SS+W G+K  +  + QN  W +G G +I++W +NW G
Sbjct: 823  RRFFSQ-GQPIRYFVKSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNWLG 874