BLASTX nr result
ID: Coptis25_contig00025377
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00025377
(274 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi... 130 1e-28
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera] 130 1e-28
emb|CBI24272.3| unnamed protein product [Vitis vinifera] 83 2e-14
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 83 3e-14
ref|XP_003637572.1| Pentatricopeptide repeat-containing protein ... 82 6e-14
>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 130 bits (326), Expect = 1e-28
Identities = 56/91 (61%), Positives = 73/91 (80%)
Frame = -1
Query: 274 VKCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWN 95
+KCG+M++AR FFE++E KDV +WNIM+SGY SKG+ +AL MKL GV+PD+VTWN
Sbjct: 236 IKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWN 295
Query: 94 SIISGYSQKGKFEEASNFFFKMRALTDFKPN 2
+IISGY+Q G+FEEAS +F +M L DFKPN
Sbjct: 296 AIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326
Score = 74.3 bits (181), Expect = 9e-12
Identities = 31/84 (36%), Positives = 52/84 (61%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
KC +EVAR F ++ D++ WN M++GYA +G A+ MK G++PD +TWN
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469
Query: 91 IISGYSQKGKFEEASNFFFKMRAL 20
+++G++Q G + A FF +M ++
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSM 493
Score = 61.6 bits (148), Expect = 6e-08
Identities = 26/82 (31%), Positives = 49/82 (59%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
+CG ++ +R F+ M +D++ WN+MIS Y G A+N F+ + +G++P+ +T+ +
Sbjct: 647 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 706
Query: 91 IISGYSQKGKFEEASNFFFKMR 26
++S S G EE +F M+
Sbjct: 707 LLSACSHSGLIEEGWKYFKMMK 728
>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 130 bits (326), Expect = 1e-28
Identities = 56/91 (61%), Positives = 73/91 (80%)
Frame = -1
Query: 274 VKCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWN 95
+KCG+M++AR FFE++E KDV +WNIM+SGY SKG+ +AL MKL GV+PD+VTWN
Sbjct: 236 IKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWN 295
Query: 94 SIISGYSQKGKFEEASNFFFKMRALTDFKPN 2
+IISGY+Q G+FEEAS +F +M L DFKPN
Sbjct: 296 AIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326
Score = 74.3 bits (181), Expect = 9e-12
Identities = 31/84 (36%), Positives = 52/84 (61%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
KC +EVAR F ++ D++ WN M++GYA +G A+ MK G++PD +TWN
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469
Query: 91 IISGYSQKGKFEEASNFFFKMRAL 20
+++G++Q G + A FF +M ++
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSM 493
Score = 62.0 bits (149), Expect = 5e-08
Identities = 26/82 (31%), Positives = 49/82 (59%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
+CG ++ +R F+ M +D++ WN+MIS Y G A+N F+ + +G++P+ +T+ +
Sbjct: 647 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTN 706
Query: 91 IISGYSQKGKFEEASNFFFKMR 26
++S S G EE +F M+
Sbjct: 707 LLSACSHSGLIEEGWKYFKMMK 728
>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 83.2 bits (204), Expect = 2e-14
Identities = 35/64 (54%), Positives = 50/64 (78%)
Frame = -1
Query: 274 VKCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWN 95
+KCG+M++AR FFE++E KDV +WNIM+SGY SKG+ +ALN F+ M L GV+P+ +T
Sbjct: 157 IKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIA 216
Query: 94 SIIS 83
S +S
Sbjct: 217 SAVS 220
Score = 61.6 bits (148), Expect = 6e-08
Identities = 26/82 (31%), Positives = 49/82 (59%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
+CG ++ +R F+ M +D++ WN+MIS Y G A+N F+ + +G++P+ +T+ +
Sbjct: 404 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 463
Query: 91 IISGYSQKGKFEEASNFFFKMR 26
++S S G EE +F M+
Sbjct: 464 LLSACSHSGLIEEGWKYFKMMK 485
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 82.8 bits (203), Expect = 3e-14
Identities = 35/83 (42%), Positives = 54/83 (65%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
KCG++ AR FFE M+ +D + WN +I+GY KG+L ++ F+ M+ G++P VTWN
Sbjct: 232 KCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNI 291
Query: 91 IISGYSQKGKFEEASNFFFKMRA 23
+I+ YSQ GK ++A KM +
Sbjct: 292 LINSYSQSGKCDDAMELMKKMES 314
Score = 67.8 bits (164), Expect = 9e-10
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
K G++E AR F+ + KDV WN MI GY G +A + F M V P+ VTWN+
Sbjct: 403 KSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNA 462
Query: 91 IISGYSQKGKFEEASNFFFKM 29
+ISGY Q G ++A + F +M
Sbjct: 463 MISGYIQNGDEDQAMDLFHRM 483
Score = 60.1 bits (144), Expect = 2e-07
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Frame = -1
Query: 268 CGKMEVAREFFEKMELKDV----IVWNIMISGYASKGDLNRALNYFKGMKLVG-VQPDRV 104
CGK A + F KM DV + WN MISGY GD ++A++ F M+ G ++ D
Sbjct: 438 CGK---AYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTA 494
Query: 103 TWNSIISGYSQKGKFEEASNFFFKMRALTDFKPN 2
+WNS+I+GY Q G +A F +M++ +PN
Sbjct: 495 SWNSLIAGYLQNGHKNKALGIFRQMQSFC-IRPN 527
Score = 55.8 bits (133), Expect = 3e-06
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
K G + A+ F+ + KD+I WN +I+GY G + AL+ F M +GV+P R T+ S
Sbjct: 575 KSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLS 634
Query: 91 IISGYSQKGKFEEASNFFFKM 29
II +S G ++ F M
Sbjct: 635 IIYAFSLSGMVDKGKQVFSSM 655
>ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 833
Score = 81.6 bits (200), Expect = 6e-14
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = -1
Query: 271 KCGKMEVAREFFEKMELKDVIVWNIMISGYASKGDLNRALNYFKGMKLVGVQPDRVTWNS 92
KCGKME A + FE+M KDV+ WN M++GY+ G AL+ F M+ ++ D VTW+S
Sbjct: 278 KCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSS 337
Query: 91 IISGYSQKGKFEEASNFFFKM 29
+ISGY+Q+G EA + F +M
Sbjct: 338 VISGYAQRGFGCEAMDVFRQM 358