BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025369
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    59   3e-07
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    59   5e-07
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    56   3e-06
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          56   3e-06
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    56   3e-06

>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -1

Query: 317 VWGKWVLPKHSFICWQLFSNSIPTQDRMVQKKVLNHSECCLCNNSREHSKHLFFEC 150
           +W  ++ P  SFI W+L  N +PT + + ++  L  S CC C  S E S+H+FFEC
Sbjct: 40  LWNSYIPPSRSFITWRLLHNKLPTDENLRKRGCLIVSICCFCMKSAESSQHIFFEC 95


>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = -1

Query: 317 VWGKWVLPKHSFICWQLFSNSIPTQDRMVQKKVLNHSECCLCNNSREHSKHLFFECPY 144
           VW K  +PKH+FICW +  N + T+DR+    +   + C LCN+  E   HLFFECP+
Sbjct: 155 VWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPF 212


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = -1

Query: 317 VWGKWVLPKHSFICWQLFSNSIPTQDRMVQKKVLNHSECCLCNNSREHSKHLFFECPY 144
           VW K  +PKH+FICW +  N + T+DR+    +   +EC LCN   +   HLFFEC +
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQF 190


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = -1

Query: 317 VWGKWVLPKHSFICWQLFSNSIPTQDRMVQKKVLNHSECCLCNNSREHSKHLFFECPY 144
           VW K  +PKH+FICW +  N + T+DR+    +   +EC LCN   +   HLFFEC +
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQF 190


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = -1

Query: 317 VWGKWVLPKHSFICWQLFSNSIPTQDRMVQKKVLNHSECCLCNNSREHSKHLFFECPY 144
           VW K  +PKH+FICW +  N + T+DR+    +   +EC LCN   +   HLFFEC +
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQF 190