BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025364
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28363.3| unnamed protein product [Vitis vinifera]              166   2e-39
ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi...   145   6e-33
ref|XP_001775099.1| predicted protein [Physcomitrella patens sub...   103   2e-20
dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]    101   1e-19
ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containi...   100   3e-19

>emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  166 bits (421), Expect = 2e-39
 Identities = 95/186 (51%), Positives = 124/186 (66%), Gaps = 8/186 (4%)
 Frame = +3

Query: 84  MVSMLTCALPSFPLTFT----HPRHLLQ--TNRITTHDVKKLKR--IHARTKSTILFFNL 239
           M S+LTC    F L  +    H + LLQ  +N I    +K + +  IHART+     FNL
Sbjct: 1   MQSLLTCPTTPFLLPPSLHNLHSQTLLQLQSNHIAQTKLKPIPQNEIHARTR----LFNL 56

Query: 240 YFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGNVS 419
           Y ++Y + G M EA+ LFDEMPER+L+SWTI+MSGY RHG A E L +F +M+   G   
Sbjct: 57  YLRMYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGL 116

Query: 420 LQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYASCGCVWDSV 599
           L+PDSFV+A+VLRAC +V+ LSYGR +H  V+K   VVD++VENALVSMY SCG + D+ 
Sbjct: 117 LRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAA 176

Query: 600 RVFNGI 617
            VF GI
Sbjct: 177 VVFGGI 182



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 39/126 (30%), Positives = 74/126 (58%)
 Frame = +3

Query: 234 NLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGN 413
           N    +Y S G + +A  +F  + +  L+ W+ ++SGY ++G  +E L +F +MV    +
Sbjct: 160 NALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMV----S 215

Query: 414 VSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYASCGCVWD 593
             ++PD+F +++VL AC+ ++   +G + HC ++K+      Y+EN+L+  YA CG +  
Sbjct: 216 GGIEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEG 275

Query: 594 SVRVFN 611
             RVF+
Sbjct: 276 MRRVFS 281



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 38/121 (31%), Positives = 63/121 (52%)
 Frame = +3

Query: 216 STILFFNLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNM 395
           S +   N     YA  G +   + +F  M E+ L+SW   ++GY  + H  E L +FQ +
Sbjct: 255 SCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQIL 314

Query: 396 VECHGNVSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYAS 575
           +E    VS Q D F    +L+A S + +L +G+E+H  +L+     + YV ++L+ MY  
Sbjct: 315 ME---EVS-QCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSLLDMYIG 370

Query: 576 C 578
           C
Sbjct: 371 C 371


>ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 906

 Score =  145 bits (366), Expect = 6e-33
 Identities = 72/123 (58%), Positives = 92/123 (74%)
 Frame = +3

Query: 249 IYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGNVSLQP 428
           +Y + G M EA+ LFDEMPER+L+SWTI+MSGY RHG A E L +F +M+   G   L+P
Sbjct: 1   MYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLLRP 60

Query: 429 DSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYASCGCVWDSVRVF 608
           DSFV+A+VLRAC +V+ LSYGR +H  V+K   VVD++VENALVSMY SCG + D+  VF
Sbjct: 61  DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVF 120

Query: 609 NGI 617
            GI
Sbjct: 121 GGI 123



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 39/126 (30%), Positives = 74/126 (58%)
 Frame = +3

Query: 234 NLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGN 413
           N    +Y S G + +A  +F  + +  L+ W+ ++SGY ++G  +E L +F +MV    +
Sbjct: 101 NALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMV----S 156

Query: 414 VSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYASCGCVWD 593
             ++PD+F +++VL AC+ ++   +G + HC ++K+      Y+EN+L+  YA CG +  
Sbjct: 157 GGIEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEG 216

Query: 594 SVRVFN 611
             RVF+
Sbjct: 217 MRRVFS 222



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 38/121 (31%), Positives = 63/121 (52%)
 Frame = +3

Query: 216 STILFFNLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNM 395
           S +   N     YA  G +   + +F  M E+ L+SW   ++GY  + H  E L +FQ +
Sbjct: 196 SCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQIL 255

Query: 396 VECHGNVSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYAS 575
           +E    VS Q D F    +L+A S + +L +G+E+H  +L+     + YV ++L+ MY  
Sbjct: 256 ME---EVS-QCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSLLDMYIG 311

Query: 576 C 578
           C
Sbjct: 312 C 312



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
 Frame = +3

Query: 213 KSTILFFNLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQN 392
           KS     +    +Y+  G+   A+ +F  + +     W+ L+SG++ +G   E L +F+ 
Sbjct: 371 KSDSYVLSSLIDMYSKCGIWEAAKRVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRK 430

Query: 393 MVECHGNVSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNY-VENALVSMY 569
           M +  G   ++ + F +  V+ AC  ++NL  G+ELHC++L+  G   N+ V N L+++Y
Sbjct: 431 M-QFDG---IKANEFTFTSVILACLALENLRKGKELHCKILR-SGYESNFSVVNTLINLY 485

Query: 570 A 572
           +
Sbjct: 486 S 486


>ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162673550|gb|EDQ60071.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  103 bits (258), Expect = 2e-20
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 5/157 (3%)
 Frame = +3

Query: 165 ITTHDVKKLKRIHAR-----TKSTILFFNLYFQIYASVGLMHEAQTLFDEMPERTLISWT 329
           +   D+   K++H        K  +   N   ++YA  G ++EA+ LFD+   ++++SW 
Sbjct: 39  VKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWN 98

Query: 330 ILMSGYTRHGHADETLGVFQNMVECHGNVSLQPDSFVYAIVLRACSVVKNLSYGRELHCR 509
           +++SGY   G A E   +F  M +      L+PD F +  +L ACS    L++GRE+H R
Sbjct: 99  VMISGYAHRGLAQEAFNLFTLMQQ----ERLEPDKFTFVSILSACSSPAVLNWGREIHVR 154

Query: 510 VLKIDGVVDNYVENALVSMYASCGCVWDSVRVFNGIA 620
           V++     D  V NAL+SMYA CG V D+ RVF+ +A
Sbjct: 155 VMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA 191



 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 5/148 (3%)
 Frame = +3

Query: 192 KRIHARTK-----STILFFNLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRH 356
           K IHAR       S + F N    +Y+  G M +A+ +FD MP+R ++SWT L+  Y   
Sbjct: 351 KEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADC 410

Query: 357 GHADETLGVFQNMVECHGNVSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVD 536
               E+   F+ M++      ++ +   Y  VL+ACS    L +G+E+H  V+K   + D
Sbjct: 411 DQVVESFTTFKQMLQ----QGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLAD 466

Query: 537 NYVENALVSMYASCGCVWDSVRVFNGIA 620
             V NAL+SMY  CG V D++RVF G++
Sbjct: 467 LAVTNALMSMYFKCGSVEDAIRVFEGMS 494



 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 38/125 (30%), Positives = 61/125 (48%)
 Frame = +3

Query: 234 NLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGN 413
           N    +YA  G + +A+ +FD M  R  +SWT L   Y   G+ +E+L  +  M++    
Sbjct: 168 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ---- 223

Query: 414 VSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYASCGCVWD 593
             ++P    Y  VL AC  +  L  G+++H  +++ +   D  V  AL  MY  CG   D
Sbjct: 224 ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKD 283

Query: 594 SVRVF 608
           +  VF
Sbjct: 284 AREVF 288



 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
 Frame = +3

Query: 180 VKKLKRIHART-----KSTILFFNLYFQIYASVGLMHEAQTLFDEMPERTLISWTILMSG 344
           ++K K+IHA        S +       ++Y   G   +A+ +F+ +  R +I+W  ++ G
Sbjct: 246 LEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRG 305

Query: 345 YTRHGHADETLGVFQNMVECHGNVSLQPDSFVYAIVLRACSVVKNLSYGRELHCRVLKID 524
           +   G  +E  G F  M+E      + PD   Y  VL AC+    L+ G+E+H R  K  
Sbjct: 306 FVDSGQLEEAHGTFHRMLE----EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDG 361

Query: 525 GVVDNYVENALVSMYASCGCVWDSVRVFN 611
            V D    NAL++MY+  G + D+ +VF+
Sbjct: 362 LVSDVRFGNALINMYSKAGSMKDARQVFD 390


>dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  101 bits (251), Expect = 1e-19
 Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
 Frame = +3

Query: 108 LPSFPLTFTHPRHLLQTNRITTHDVKKLKRIHART------KSTILFFNLYFQIYASVGL 269
           L S P  + H   +LQ+  + +  ++  +++H R         T+L   L   +YA+ G 
Sbjct: 55  LASSPHAYHHHTSILQSC-VASGSLRAGRQLHGRLLVSGLGPDTVLSTKLV-DLYAACGQ 112

Query: 270 MHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGNVSLQPDSFVYAI 449
           +  A+ LFD MP+R +  W +L+  Y R G  +  + +++ MVE HG   ++PD+F Y +
Sbjct: 113 VGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVE-HG---VEPDNFTYPL 168

Query: 450 VLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMYASCGCVWDSVRVFNGIA 620
           VL+AC+ + +L  GRE+H RV       D +V   +V MYA CGCV D+  VF+GIA
Sbjct: 169 VLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIA 225



 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 28/73 (38%), Positives = 44/73 (60%)
 Frame = +3

Query: 249 IYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGNVSLQP 428
           +YA  G +  A+ LF+++ +R L+SW  ++ GY  HGHADE L +F  M    G+  + P
Sbjct: 308 MYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKM---KGDAQVTP 364

Query: 429 DSFVYAIVLRACS 467
           D+  +  VL AC+
Sbjct: 365 DNITFVGVLSACN 377


>ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 789

 Score =  100 bits (248), Expect = 3e-19
 Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
 Frame = +3

Query: 252 YASVGLMHEAQTLFDEMPE--RTLISWTILMSGYTRHGHADETLGVFQNMVECHGNVSLQ 425
           +   G M  A+ +FD MP   R+L++WT +MSGY  HG A E L +   M+      SL+
Sbjct: 48  HTRAGRMEPARQVFDAMPPPARSLVAWTAIMSGYATHGPASEALVLLLRMMAW----SLR 103

Query: 426 PDSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGV-VDNYVENALVSMYASCGCVWDSVR 602
           PD FV+++ LRAC+ + +  +GR+LHC   K+  V  D +V N L++MYASC  +  + +
Sbjct: 104 PDGFVFSVALRACAAIGSQRFGRQLHCAAAKMGYVGADLFVANGLLTMYASCRSLGCAEK 163

Query: 603 VFNGIA 620
           VFNGIA
Sbjct: 164 VFNGIA 169



 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 36/107 (33%), Positives = 62/107 (57%)
 Frame = +3

Query: 249 IYASVGLMHEAQTLFDEMPERTLISWTILMSGYTRHGHADETLGVFQNMVECHGNVSLQP 428
           +YAS   +  A+ +F+ +    L+SWT ++SGYT +G   E + +F  MV    +  ++ 
Sbjct: 151 MYASCRSLGCAEKVFNGIATPDLVSWTSMLSGYTENGCHAEAVMLFVEMV----HAGIRC 206

Query: 429 DSFVYAIVLRACSVVKNLSYGRELHCRVLKIDGVVDNYVENALVSMY 569
           D+F  ++ LRA S + NLS G +LHC ++K+      ++EN L+  Y
Sbjct: 207 DAFTLSVALRAASSLANLSLGHQLHCCIIKLGFSNSGFLENCLIEFY 253