BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025351
         (233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    61   8e-08
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    60   2e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    60   2e-07
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    60   2e-07
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    59   3e-07

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 12   NHATNLKHIWHIVSGKETLWVNCVNKKLIKNRNFWHLK-VPNDYSWVWRNILHDRKFASP 188
            N    LK +W IVS   +LWV  V++ L++N +FW +K   +  SW+W+ +L  R+ A  
Sbjct: 883  NDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKT 942

Query: 189  IALHQI*NGDNTKFW 233
            ++  ++ NG  T FW
Sbjct: 943  LSKVEVGNGKQTSFW 957


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/76 (34%), Positives = 42/76 (55%)
 Frame = +3

Query: 6    ILNHATNLKHIWHIVSGKETLWVNCVNKKLIKNRNFWHLKVPNDYSWVWRNILHDRKFAS 185
            + N A  +K +W I+  K+ +WV  V +K +K +N    K+P++ SW W+N+L  R F S
Sbjct: 876  VTNIALQMKLLWKIMVSKDNIWVKLVTQKYLKEQNLLVCKIPSNASWQWKNLLRHRNFFS 935

Query: 186  PIALHQI*NGDNTKFW 233
                  I +G +  FW
Sbjct: 936  KGLRWLIGDGQDISFW 951


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +3

Query: 12  NHATNLKHIWHIVSGKETLWVNCVNKKLIKNRNFWHLKVPNDY-SWVWRNILHDRKFASP 188
           N  ++LK IW ++S +++LWV      L+K  +FW +   +   SW+WR +L  R+ A  
Sbjct: 604 NKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKS 663

Query: 189 IALHQI*NGDNTKFW 233
               ++ NG NT FW
Sbjct: 664 FCKIEVNNGVNTSFW 678


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +3

Query: 12   NHATNLKHIWHIVSGKETLWVNCVNKKLIKNRNFWHLKVPNDY-SWVWRNILHDRKFASP 188
            N  + LK IW I+S +++LWV  VNK LI+   FW +K      SW+WR IL  R  A  
Sbjct: 1030 NEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARL 1089

Query: 189  IALHQI*NGDNTKFW 233
                ++ +G  T FW
Sbjct: 1090 FHRMEVRSGTFTSFW 1104


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = +3

Query: 12   NHATNLKHIWHIVSGKETLWVNCVNKKLIKNRNFWHLKVPNDY--SWVWRNILHDRKFAS 185
            N  + LK IW + S  ++LWV      L+K  +FW LK PN    SW+W+ +L  R+ A 
Sbjct: 799  NVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLK-PNSSLGSWMWKKMLKYRETAK 857

Query: 186  PIALHQI*NGDNTKFW 233
            P +  ++ NG  T FW
Sbjct: 858  PFSRVEVNNGARTSFW 873