BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025350
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267457.1| PREDICTED: peptidyl-tRNA hydrolase ICT1, mit...   156   2e-36
ref|XP_002886449.1| translation release factor [Arabidopsis lyra...   150   8e-35
ref|XP_002509613.1| immature colon carcinoma transcript, putativ...   149   2e-34
ref|XP_002329853.1| predicted protein [Populus trichocarpa] gi|2...   147   7e-34
ref|NP_001077760.1| Class I peptide chain release factor [Arabid...   147   1e-33

>ref|XP_002267457.1| PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Vitis
           vinifera] gi|296082846|emb|CBI22147.3| unnamed protein
           product [Vitis vinifera]
          Length = 230

 Score =  156 bits (394), Expect = 2e-36
 Identities = 91/146 (62%), Positives = 109/146 (74%), Gaps = 2/146 (1%)
 Frame = +3

Query: 21  TSLVIKQIIHNPPFLKSIAIIFQTTSLNFRVSDDAAFRITPTHRYISSGRIRCMAASDSG 200
           T++++K+I H    L+S  + FQ    NF V           +R IS  RIRC AA+DSG
Sbjct: 8   TNMIVKEIFHVSLSLRSERM-FQMVLPNFSVYCGTV------NRGISYSRIRC-AAADSG 59

Query: 201 D--KKFSSRLAQVQQLIHEAEERSLSAVNEPPTPKIALEHVSVSFARSGGPGGQNVNKVN 374
           D  +K S+RL+QVQQL+ EAEERSLS  NEP TPKI L+HV+VSFARSGGPGGQNVNKVN
Sbjct: 60  DGGRKVSARLSQVQQLLQEAEERSLSFGNEP-TPKITLDHVTVSFARSGGPGGQNVNKVN 118

Query: 375 TKVDMRFNVKKAYWLSDRIRERILQL 452
           TKVDMRFNVK AYWLSDR+RERI+Q+
Sbjct: 119 TKVDMRFNVKNAYWLSDRVRERIMQM 144


>ref|XP_002886449.1| translation release factor [Arabidopsis lyrata subsp. lyrata]
           gi|297332290|gb|EFH62708.1| translation release factor
           [Arabidopsis lyrata subsp. lyrata]
          Length = 236

 Score =  150 bits (380), Expect = 8e-35
 Identities = 80/146 (54%), Positives = 108/146 (73%), Gaps = 3/146 (2%)
 Frame = +3

Query: 18  MTSLVIKQIIHNPPFLKSIAIIFQTTSLNFRVSDDAAFRITPTHRYISSGRIRCMAASD- 194
           MT++++++  H+P  L S +   Q+     R++      I P H     G IRC+A++  
Sbjct: 7   MTNMILREFSHHPLLLHSSSKSCQSLLPCLRLTP----LIAPIHSNSRFGSIRCVASTSG 62

Query: 195 --SGDKKFSSRLAQVQQLIHEAEERSLSAVNEPPTPKIALEHVSVSFARSGGPGGQNVNK 368
             +GD+K SSRL+QVQQ++HEAEER+ SA NEP TP+I L+HV+++FARSGGPGGQNVNK
Sbjct: 63  GSNGDRKVSSRLSQVQQMLHEAEERANSAGNEP-TPQITLDHVTLNFARSGGPGGQNVNK 121

Query: 369 VNTKVDMRFNVKKAYWLSDRIRERIL 446
           +NTKVDMRFNVK AYWLSDRIRE+I+
Sbjct: 122 LNTKVDMRFNVKNAYWLSDRIREKII 147


>ref|XP_002509613.1| immature colon carcinoma transcript, putative [Ricinus communis]
           gi|223549512|gb|EEF51000.1| immature colon carcinoma
           transcript, putative [Ricinus communis]
          Length = 234

 Score =  149 bits (377), Expect = 2e-34
 Identities = 85/145 (58%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
 Frame = +3

Query: 21  TSLVIKQIIHNPPFLKSIAIIFQTT-SLNFRVSDDAAFRITPTHRYISSGRIRCMAASDS 197
           T++++K+I++    L   ++   +  SL    ++  A  +  T R +S  RIRC AASD 
Sbjct: 8   TTMILKEIVYCRLRLSFSSLSSSSLPSLRLTPTNLHANAVKFTRRELSFSRIRC-AASD- 65

Query: 198 GDKKFSSRLAQVQQLIHEAEERSLSAVNEPPTPKIALEHVSVSFARSGGPGGQNVNKVNT 377
            DKK S+RL+QVQQL+ EAEE+++SA NEPP PKI L+HV+VSFARSGGPGGQNVNKVNT
Sbjct: 66  -DKKVSARLSQVQQLLQEAEEQAISAGNEPP-PKITLDHVTVSFARSGGPGGQNVNKVNT 123

Query: 378 KVDMRFNVKKAYWLSDRIRERILQL 452
           KVDMRFNVK AYWLSDRIR+RI+Q+
Sbjct: 124 KVDMRFNVKDAYWLSDRIRDRIMQM 148


>ref|XP_002329853.1| predicted protein [Populus trichocarpa] gi|222871090|gb|EEF08221.1|
           predicted protein [Populus trichocarpa]
          Length = 226

 Score =  147 bits (372), Expect = 7e-34
 Identities = 83/144 (57%), Positives = 106/144 (73%)
 Frame = +3

Query: 21  TSLVIKQIIHNPPFLKSIAIIFQTTSLNFRVSDDAAFRITPTHRYISSGRIRCMAASDSG 200
           T++++KQ+  N   +  +++    ++L++         +   +R ISS RI+C AASD  
Sbjct: 8   TNMILKQVFLNHRLIPPLSVTRTLSNLHWA-------SLEVPNRQISSCRIKC-AASD-- 57

Query: 201 DKKFSSRLAQVQQLIHEAEERSLSAVNEPPTPKIALEHVSVSFARSGGPGGQNVNKVNTK 380
           DKK S+RL+QV QL+ EAEER+ SAV   PTPKI   HV+VSFARSGGPGGQNVNKVNTK
Sbjct: 58  DKKVSARLSQVHQLLQEAEERA-SAVGNEPTPKITRGHVTVSFARSGGPGGQNVNKVNTK 116

Query: 381 VDMRFNVKKAYWLSDRIRERILQL 452
           VDMRFNVKKAYWLSDRIRERI+Q+
Sbjct: 117 VDMRFNVKKAYWLSDRIRERIMQM 140


>ref|NP_001077760.1| Class I peptide chain release factor [Arabidopsis thaliana]
           gi|145326104|ref|NP_001077761.1| Class I peptide chain
           release factor [Arabidopsis thaliana]
           gi|27754314|gb|AAO22610.1| unknown protein [Arabidopsis
           thaliana] gi|28393873|gb|AAO42344.1| unknown protein
           [Arabidopsis thaliana] gi|332195891|gb|AEE34012.1| Class
           I peptide chain release factor [Arabidopsis thaliana]
           gi|332195892|gb|AEE34013.1| Class I peptide chain
           release factor [Arabidopsis thaliana]
          Length = 236

 Score =  147 bits (370), Expect = 1e-33
 Identities = 79/146 (54%), Positives = 107/146 (73%), Gaps = 3/146 (2%)
 Frame = +3

Query: 18  MTSLVIKQIIHNPPFLKSIAIIFQTTSLNFRVSDDAAFRITPTHRYISSGRIRCMAASDS 197
           MT++++++ IH+P  L S +   Q+     R++      I+P H       +RC A++  
Sbjct: 7   MTNMILREFIHHPLLLHSSSKSCQSLLPCLRLTP----LISPIHSNSRLVSVRCAASTSG 62

Query: 198 G---DKKFSSRLAQVQQLIHEAEERSLSAVNEPPTPKIALEHVSVSFARSGGPGGQNVNK 368
           G   D+K SSRL+QVQQ++HEAEER+ SA NEP TP+I L++V+++FARSGGPGGQNVNK
Sbjct: 63  GSGGDRKVSSRLSQVQQMLHEAEERASSAGNEP-TPQITLDNVTLNFARSGGPGGQNVNK 121

Query: 369 VNTKVDMRFNVKKAYWLSDRIRERIL 446
           +NTKVDMRFNVK AYWLSDRIRE+IL
Sbjct: 122 LNTKVDMRFNVKNAYWLSDRIREKIL 147