BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025321
         (499 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36340.3| unnamed protein product [Vitis vinifera]              202   2e-50
ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containi...   202   2e-50
ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containi...   184   5e-45
ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|2...   179   3e-43
ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42

>emb|CBI36340.3| unnamed protein product [Vitis vinifera]
          Length = 630

 Score =  202 bits (514), Expect = 2e-50
 Identities = 102/156 (65%), Positives = 123/156 (78%)
 Frame = +2

Query: 32  IKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEM 211
           I+LLK SADTKNLK G+ IHAHL+I+   T+ NI+Q NSLI+LY KC+Q+ +AR LFD M
Sbjct: 260 IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 319

Query: 212 PERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEG 391
            +RNVVSW +LMAGYFH+G  LEVLRLFK M +  +  PNEYIFAT++SSCS    V EG
Sbjct: 320 RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 379

Query: 392 MQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGAL 499
            QCHGY LKSGLVFH YVKNALI MY+R  D++GA+
Sbjct: 380 WQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAM 415



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/107 (34%), Positives = 62/107 (57%)
 Frame = +2

Query: 62  KNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEMPERNVVSWSS 241
           K+L+LG  +H  +  +    + +   ++++I +Y KC  +  ARK+F+ +  +NVVSW++
Sbjct: 443 KDLRLGLQVHCRMFRT--GAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTA 500

Query: 242 LMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAV 382
           ++A Y  +G   E L  F  M       PNEY FA +L+SC+ I AV
Sbjct: 501 ILAAYSQNGCFEEALNFFPEM-EVDGLLPNEYTFAVLLNSCADIAAV 546


>ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  202 bits (514), Expect = 2e-50
 Identities = 102/156 (65%), Positives = 123/156 (78%)
 Frame = +2

Query: 32  IKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEM 211
           I+LLK SADTKNLK G+ IHAHL+I+   T+ NI+Q NSLI+LY KC+Q+ +AR LFD M
Sbjct: 29  IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 88

Query: 212 PERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEG 391
            +RNVVSW +LMAGYFH+G  LEVLRLFK M +  +  PNEYIFAT++SSCS    V EG
Sbjct: 89  RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 392 MQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGAL 499
            QCHGY LKSGLVFH YVKNALI MY+R  D++GA+
Sbjct: 149 WQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAM 184



 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 51/145 (35%), Positives = 82/145 (56%)
 Frame = +2

Query: 62  KNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEMPERNVVSWSS 241
           K+L+LG  +H  +  +    + +   ++++I +Y KC  +  ARK+F+ +  +NVVSW++
Sbjct: 244 KDLRLGLQVHCRMFRT--GAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTA 301

Query: 242 LMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEGMQCHGYVLKS 421
           ++A Y  +G   E L  F  M       PNEY FA +L+SC+ I A+  G   H  + KS
Sbjct: 302 ILAAYSQNGCFEEALNFFPEMEVDGLL-PNEYTFAVLLNSCAGISALGHGKLLHTRIKKS 360

Query: 422 GLVFHSYVKNALIHMYTRCLDMEGA 496
           G   H  V NALI+MY++   +E A
Sbjct: 361 GFEDHIIVGNALINMYSKSGSIEAA 385



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 40/127 (31%), Positives = 65/127 (51%)
 Frame = +2

Query: 38  LLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEMPE 217
           LL   A    L  G+ +H    I     + +II  N+LI++Y K   +  A K+F EM  
Sbjct: 337 LLNSCAGISALGHGKLLHTR--IKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMIC 394

Query: 218 RNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEGMQ 397
           R+ ++WS+++ G  H G   E L +F+ M      CP+   F  VLS+C+ + +V+EG  
Sbjct: 395 RDSITWSAMICGLSHHGLGREALVVFQEMLA-AKECPHYVTFVGVLSACAHLGSVQEGFY 453

Query: 398 CHGYVLK 418
               ++K
Sbjct: 454 YLNQLMK 460


>ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  184 bits (468), Expect = 5e-45
 Identities = 96/161 (59%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
 Frame = +2

Query: 20  HTLVIKLLKFSADTKNLKLGQTIHAHLLISTPNTQ-LNIIQTNSLIHLYVKCNQLSLARK 196
           H   IKLLK +AD KNLK G+TIHAHL I+  N +   + Q NSLI+LYVKC+++S+ARK
Sbjct: 19  HQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARK 78

Query: 197 LFDEMPERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIM 376
           LFD MP RNVVSWS+LMAGY  +G  LEV  LFK M       PNEY+ AT +SSC + M
Sbjct: 79  LFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQM 138

Query: 377 AVKEGMQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGAL 499
            V EG QCHGY LKSGL FH YVKNALI +Y++C D+  A+
Sbjct: 139 YV-EGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAI 178



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
 Frame = +2

Query: 14  YNHTLVIKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLAR 193
           +N+   + + +  A  K++ LG+ +HA +L S  +  + I   +S+I +Y KC  +   R
Sbjct: 222 WNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYI--GSSIIDMYGKCGNVLSGR 279

Query: 194 KLFDEMPERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFC--PNEYIFATVLSSCS 367
             FD +  RNVVSW+S++A YF +    E L LF  M      C  PNEY  A + +S +
Sbjct: 280 TFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKME---IDCIPPNEYTMAVLFNSAA 336

Query: 368 AIMAVKEGMQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGA 496
            + A+  G Q H    KSGL  +  V NALI MY +  D+  A
Sbjct: 337 GLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAA 379



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 37/137 (27%), Positives = 67/137 (48%)
 Frame = +2

Query: 8   PSYNHTLVIKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSL 187
           P   +T+ + L   +A    L LG  +HA    S    + N++  N+LI +Y K   +  
Sbjct: 322 PPNEYTMAV-LFNSAAGLSALCLGDQLHARAEKS--GLKGNVMVGNALIIMYFKSGDILA 378

Query: 188 ARKLFDEMPERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCS 367
           A+ +F  M   N+++W++++ G+ H G   E L +F+ M       PN   F  V+ +C+
Sbjct: 379 AQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMA-TGERPNYVTFIGVILACA 437

Query: 368 AIMAVKEGMQCHGYVLK 418
            +  V EG     +++K
Sbjct: 438 HLKLVDEGFYYFNHLMK 454


>ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|222867067|gb|EEF04198.1|
           predicted protein [Populus trichocarpa]
          Length = 707

 Score =  179 bits (453), Expect = 3e-43
 Identities = 87/157 (55%), Positives = 118/157 (75%)
 Frame = +2

Query: 29  VIKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDE 208
           +IKLLK SADTKNLK+G+TIH+HL++++  T+ +II+ NSLI+ Y K NQ+S+A  LFD 
Sbjct: 32  LIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDR 91

Query: 209 MPERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKE 388
           MPERNVVSWS+LM GY  +G SL+V+RL K M +     PNEYI A  +SSC     V+E
Sbjct: 92  MPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEE 151

Query: 389 GMQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGAL 499
           G QCHG +LK+G  FH+YV+NAL+ MY++C  ++ A+
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAM 188



 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 53/155 (34%), Positives = 87/155 (56%)
 Frame = +2

Query: 32  IKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEM 211
           +      A  K+L+LG  +H  +L  T + + +   ++++I++Y KC +  +AR +FD +
Sbjct: 238 VNAFSLCASLKDLRLGLHVHGKML--TSDVECDAYVSSAIINMYGKCGKSLMARGVFDGL 295

Query: 212 PERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEG 391
             RNVV W+++MA  F +G   E L LF  M        NE+ +A +L++C+ + A + G
Sbjct: 296 QSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQ-ENVKSNEFTYAVLLNACAGLSARRNG 354

Query: 392 MQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGA 496
              HG+  KSG   H  V NALI+MY +  D+E A
Sbjct: 355 SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAA 389



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
 Frame = +2

Query: 11  SYNHTLVIKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLA 190
           S N  ++   +    D   ++ G+  H  LL+ T  +  N ++ N+L+ +Y KC+ +  A
Sbjct: 130 SPNEYILAIAISSCCDRGRVEEGRQCHG-LLLKTGFSFHNYVR-NALVSMYSKCSIVQDA 187

Query: 191 RKLFDEMPERNVVSWSSLMA-----GYFHSGGSLEVLRLFKCMS-NWVFFCPNEYIFATV 352
             +++E+P  ++V+++S+++     GY   G  LEVLR     S  W     ++  F   
Sbjct: 188 MGVWNEVPVNDIVAYNSILSSLVENGYLREG--LEVLRSMVSESVKW-----DKVTFVNA 240

Query: 353 LSSCSAIMAVKEGMQCHGYVLKSGLVFHSYVKNALIHMYTRC 478
            S C+++  ++ G+  HG +L S +   +YV +A+I+MY +C
Sbjct: 241 FSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKC 282



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 35/127 (27%), Positives = 66/127 (51%)
 Frame = +2

Query: 38  LLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEMPE 217
           LL   A     + G  +H H   S    + +++  N+LI++Y K   +  A+K+F +M  
Sbjct: 341 LLNACAGLSARRNGSLLHGHSEKS--GFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMH 398

Query: 218 RNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEGMQ 397
           R++++W++++ G+ H G   + L +F+ M       PN   F  VLS+C  +  V+EG  
Sbjct: 399 RDIITWNAMICGFSHHGLGKKALLVFQDMLA-AEEHPNYVTFTGVLSACGHLGLVQEGFY 457

Query: 398 CHGYVLK 418
              +++K
Sbjct: 458 YLHHLMK 464


>ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  177 bits (448), Expect = 1e-42
 Identities = 90/158 (56%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
 Frame = +2

Query: 29  VIKLLKFSADTKNLKLGQTIHAHLLISTPNTQ-LNIIQTNSLIHLYVKCNQLSLARKLFD 205
           V+ LLKFSA  K+L+ G+TIHA L++    ++  +I Q NSLI+LY KC Q   ARKLFD
Sbjct: 26  VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFD 85

Query: 206 EMPERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVK 385
            M +RNVVSWS+LM GY H G  LEVL LF+ + +     PNEYIF  VLS C+    VK
Sbjct: 86  RMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVK 145

Query: 386 EGMQCHGYVLKSGLVFHSYVKNALIHMYTRCLDMEGAL 499
           EG QCHGY+LKSGL+ H YVKNALIHMY+RC  ++ A+
Sbjct: 146 EGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAM 183



 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 53/148 (35%), Positives = 88/148 (59%)
 Frame = +2

Query: 32  IKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEM 211
           + +L   A  ++L+LG  IHA LL +      ++  +++LI  Y KC ++  ARK FD +
Sbjct: 233 VSVLGLCAQIRDLQLGLQIHAQLLKT--GLVFDVFVSSTLIDTYGKCGEVLNARKQFDGL 290

Query: 212 PERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEG 391
            +RNVV+W++++  Y  +G   E L LF  M       PNE+ FA +L++C++++A+  G
Sbjct: 291 RDRNVVAWTAVLTAYLQNGHFEETLNLFTKM-ELEDTRPNEFTFAVLLNACASLVALAYG 349

Query: 392 MQCHGYVLKSGLVFHSYVKNALIHMYTR 475
              HG ++ SG   H  V NALI+MY++
Sbjct: 350 DLLHGRIVMSGFKNHLIVGNALINMYSK 377



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 46/154 (29%), Positives = 81/154 (52%)
 Frame = +2

Query: 17  NHTLVIKLLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARK 196
           N  +   +L   AD+  +K G+  H +LL S     L+    N+LIH+Y +C  +  A +
Sbjct: 127 NEYIFTIVLSCCADSGRVKEGKQCHGYLLKS--GLLLHQYVKNALIHMYSRCFHVDSAMQ 184

Query: 197 LFDEMPERNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIM 376
           + D +P  +V S++S+++    SG   E  ++ K M +      +   + +VL  C+ I 
Sbjct: 185 ILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIW-DSVTYVSVLGLCAQIR 243

Query: 377 AVKEGMQCHGYVLKSGLVFHSYVKNALIHMYTRC 478
            ++ G+Q H  +LK+GLVF  +V + LI  Y +C
Sbjct: 244 DLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKC 277



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/127 (29%), Positives = 66/127 (51%)
 Frame = +2

Query: 38  LLKFSADTKNLKLGQTIHAHLLISTPNTQLNIIQTNSLIHLYVKCNQLSLARKLFDEMPE 217
           LL   A    L  G  +H  +++S    + ++I  N+LI++Y K   +  +  +F  M  
Sbjct: 336 LLNACASLVALAYGDLLHGRIVMS--GFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMN 393

Query: 218 RNVVSWSSLMAGYFHSGGSLEVLRLFKCMSNWVFFCPNEYIFATVLSSCSAIMAVKEGMQ 397
           R+V++W++++ GY H G   + L +F+ M +    CPN   F  VLS+C  +  V+EG  
Sbjct: 394 RDVITWNAMICGYSHHGLGKQALLVFQDMMS-AGECPNYVTFIGVLSACVHLALVQEGFY 452

Query: 398 CHGYVLK 418
               ++K
Sbjct: 453 YFDQIMK 459