BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025283
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   141   6e-32
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   138   4e-31
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   138   4e-31
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   135   3e-30
gb|AFK41039.1| unknown [Medicago truncatula]                          135   3e-30

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  141 bits (355), Expect = 6e-32
 Identities = 72/92 (78%), Positives = 75/92 (81%)
 Frame = -2

Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98
           RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +IHIN          EK
Sbjct: 149 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEK 208

Query: 97  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
             W+ESSPTKVF IDPNT QV+VVD EAYTYD
Sbjct: 209 QSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 320

 Score =  138 bits (348), Expect = 4e-31
 Identities = 71/92 (77%), Positives = 75/92 (81%)
 Frame = -2

Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98
           RGIIIVKLRRGQEL+L AIARKGIGKDHAKWSPAATVTFMYE EIHIN          EK
Sbjct: 151 RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEK 210

Query: 97  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
             W++SSPT+VF IDP T QVMVVDAEAYTYD
Sbjct: 211 REWVDSSPTRVFEIDPVTQQVMVVDAEAYTYD 242


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 319

 Score =  138 bits (348), Expect = 4e-31
 Identities = 71/92 (77%), Positives = 75/92 (81%)
 Frame = -2

Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98
           RGIIIVKLRRGQEL+L AIARKGIGKDHAKWSPAATVTFMYE EIHIN          EK
Sbjct: 150 RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEK 209

Query: 97  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
             W++SSPT+VF IDP T QVMVVDAEAYTYD
Sbjct: 210 REWVDSSPTRVFEIDPVTQQVMVVDAEAYTYD 241


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
           gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
           [Medicago truncatula] gi|355508950|gb|AES90092.1|
           DNA-directed RNA polymerase II subunit RPB3-A [Medicago
           truncatula]
          Length = 318

 Score =  135 bits (340), Expect = 3e-30
 Identities = 69/92 (75%), Positives = 74/92 (80%)
 Frame = -2

Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98
           RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +IHIN          EK
Sbjct: 149 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEK 208

Query: 97  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
             W++SSPT+VF IDP T QVMVVD EAY+YD
Sbjct: 209 KEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  135 bits (340), Expect = 3e-30
 Identities = 69/92 (75%), Positives = 74/92 (80%)
 Frame = -2

Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98
           RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +IHIN          EK
Sbjct: 149 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEK 208

Query: 97  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
             W++SSPT+VF IDP T QVMVVD EAY+YD
Sbjct: 209 KEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240