BLASTX nr result
ID: Coptis25_contig00025283
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025283 (278 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta... 141 6e-32 ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su... 138 4e-31 ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su... 138 4e-31 ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-... 135 3e-30 gb|AFK41039.1| unknown [Medicago truncatula] 135 3e-30 >ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] Length = 318 Score = 141 bits (355), Expect = 6e-32 Identities = 72/92 (78%), Positives = 75/92 (81%) Frame = -2 Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98 RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +IHIN EK Sbjct: 149 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEK 208 Query: 97 NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2 W+ESSPTKVF IDPNT QV+VVD EAYTYD Sbjct: 209 QSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240 >ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Glycine max] Length = 320 Score = 138 bits (348), Expect = 4e-31 Identities = 71/92 (77%), Positives = 75/92 (81%) Frame = -2 Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98 RGIIIVKLRRGQEL+L AIARKGIGKDHAKWSPAATVTFMYE EIHIN EK Sbjct: 151 RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEK 210 Query: 97 NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2 W++SSPT+VF IDP T QVMVVDAEAYTYD Sbjct: 211 REWVDSSPTRVFEIDPVTQQVMVVDAEAYTYD 242 >ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Glycine max] Length = 319 Score = 138 bits (348), Expect = 4e-31 Identities = 71/92 (77%), Positives = 75/92 (81%) Frame = -2 Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98 RGIIIVKLRRGQEL+L AIARKGIGKDHAKWSPAATVTFMYE EIHIN EK Sbjct: 150 RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEK 209 Query: 97 NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2 W++SSPT+VF IDP T QVMVVDAEAYTYD Sbjct: 210 REWVDSSPTRVFEIDPVTQQVMVVDAEAYTYD 241 >ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula] gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula] gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula] Length = 318 Score = 135 bits (340), Expect = 3e-30 Identities = 69/92 (75%), Positives = 74/92 (80%) Frame = -2 Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98 RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +IHIN EK Sbjct: 149 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEK 208 Query: 97 NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2 W++SSPT+VF IDP T QVMVVD EAY+YD Sbjct: 209 KEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240 >gb|AFK41039.1| unknown [Medicago truncatula] Length = 318 Score = 135 bits (340), Expect = 3e-30 Identities = 69/92 (75%), Positives = 74/92 (80%) Frame = -2 Query: 277 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIHINXXXXXXXXXXEK 98 RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +IHIN EK Sbjct: 149 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEK 208 Query: 97 NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2 W++SSPT+VF IDP T QVMVVD EAY+YD Sbjct: 209 KEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240