BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025217
         (898 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ri...   296   6e-78
ref|XP_002268218.1| PREDICTED: nifU-like protein 3, chloroplasti...   286   6e-75
ref|XP_004148324.1| PREDICTED: nifU-like protein 3, chloroplasti...   280   4e-73
gb|ABK95780.1| unknown [Populus trichocarpa]                          278   1e-72
ref|XP_003546416.1| PREDICTED: nifU-like protein 3, chloroplasti...   277   3e-72

>ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ricinus communis]
           gi|223528244|gb|EEF30298.1| Nitrogen fixation protein
           nifU, putative [Ricinus communis]
          Length = 220

 Score =  296 bits (757), Expect = 6e-78
 Identities = 157/222 (70%), Positives = 176/222 (79%)
 Frame = +3

Query: 42  LNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSIRHFFPSNTSYRSRKQAG 221
           +NP L   + T    LSL K    +F + SS++N+F+RG+F IRHF     +   RK AG
Sbjct: 1   MNPSLSLSERTHC--LSLFKKPVSDFCIFSSRKNAFLRGQFHIRHFSSIKLNRAPRKFAG 58

Query: 222 VVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTM 401
           +V++P CVLPLTEE+VEKVLDEVRPGLMADGGNV LHEIDGLVVVLKLQGACGSCPSSTM
Sbjct: 59  LVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVVLHEIDGLVVVLKLQGACGSCPSSTM 118

Query: 402 TLKMGIETRLRDKIPEIMEVEQILDTETGXXXXXXXXXXXXXXIRPYLSGTGGGVLELVQ 581
           TLKMGIETRLRDKIPEIM VEQILDTETG              IRPYL+GTGGGVLELVQ
Sbjct: 119 TLKMGIETRLRDKIPEIMAVEQILDTETGLELNDENVEKVLAEIRPYLAGTGGGVLELVQ 178

Query: 582 IDGYVAKVRLSGPAATVMTVRVAITQKLREKIPAIAAVQLIE 707
           ID Y+ KVRLSGPAA VMTVRVA+TQKLR+KIPAIAAVQLI+
Sbjct: 179 IDDYIVKVRLSGPAAGVMTVRVALTQKLRDKIPAIAAVQLID 220


>ref|XP_002268218.1| PREDICTED: nifU-like protein 3, chloroplastic [Vitis vinifera]
           gi|297735420|emb|CBI17860.3| unnamed protein product
           [Vitis vinifera]
          Length = 237

 Score =  286 bits (731), Expect = 6e-75
 Identities = 153/228 (67%), Positives = 172/228 (75%)
 Frame = +3

Query: 24  SSKTARLNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSIRHFFPSNTSYR 203
           S+    +N   P      + HLS+ K    + S  SS+ NSF+RG+F  RH     +   
Sbjct: 9   STAANNVNSSFPSSLWIPSSHLSISKKPISDCSAFSSRDNSFMRGQFQSRHLLGCCSRRV 68

Query: 204 SRKQAGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGS 383
             ++AG+++ P CVLPLTEE+VEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGS
Sbjct: 69  QSRRAGILVLPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGS 128

Query: 384 CPSSTMTLKMGIETRLRDKIPEIMEVEQILDTETGXXXXXXXXXXXXXXIRPYLSGTGGG 563
           CPSSTMTLKMGIETRLRDKIPEI  VEQILDTETG              IRPYL+GTGGG
Sbjct: 129 CPSSTMTLKMGIETRLRDKIPEIEAVEQILDTETGLELNEENVEKVLAEIRPYLAGTGGG 188

Query: 564 VLELVQIDGYVAKVRLSGPAATVMTVRVAITQKLREKIPAIAAVQLIE 707
           VLELVQI+ YV KVRLSGPAA VMTVRVA+TQKLREKIPAIAAVQLI+
Sbjct: 189 VLELVQINDYVIKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLID 236


>ref|XP_004148324.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Cucumis
           sativus] gi|449510563|ref|XP_004163700.1| PREDICTED:
           nifU-like protein 3, chloroplastic-like [Cucumis
           sativus]
          Length = 227

 Score =  280 bits (715), Expect = 4e-73
 Identities = 150/225 (66%), Positives = 174/225 (77%)
 Frame = +3

Query: 33  TARLNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSIRHFFPSNTSYRSRK 212
           + R  PF   P A +T++ S     +P +  +S  ++SF RG+F  RHF   N+S    +
Sbjct: 6   STRAQPFKSTPIA-ATLYRSPSHPASPSY--LSFFKSSFFRGQFCSRHFLRFNSSCTRIR 62

Query: 213 QAGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPS 392
             G V++P CVLPLTEE+VEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPS
Sbjct: 63  HLGNVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPS 122

Query: 393 STMTLKMGIETRLRDKIPEIMEVEQILDTETGXXXXXXXXXXXXXXIRPYLSGTGGGVLE 572
           STMTLKMGIETRLRDKIPEI+EVEQI+DTETG              IRPYL+GTGGG+LE
Sbjct: 123 STMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGILE 182

Query: 573 LVQIDGYVAKVRLSGPAATVMTVRVAITQKLREKIPAIAAVQLIE 707
           +++I  YV KVRLSGPAA VMTVRVA+TQKLREKIPAIAAVQLIE
Sbjct: 183 VIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227


>gb|ABK95780.1| unknown [Populus trichocarpa]
          Length = 224

 Score =  278 bits (711), Expect = 1e-72
 Identities = 152/224 (67%), Positives = 171/224 (76%), Gaps = 2/224 (0%)
 Frame = +3

Query: 42  LNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSI--RHFFPSNTSYRSRKQ 215
           LNPFL   + T    L    +   +   +SSKQN+F+RG+F    RHF     +    K 
Sbjct: 2   LNPFLSLAQKTQQ-SLLFKTDAVSDSCGLSSKQNAFLRGQFQFHSRHFLHFKLNRGRMKC 60

Query: 216 AGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSS 395
            GVV++P CVLPLTEE+VEKVLDEVRPGLM DGGNVALHEIDGLVVVLKLQGACGSCPSS
Sbjct: 61  TGVVVSPSCVLPLTEENVEKVLDEVRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSS 120

Query: 396 TMTLKMGIETRLRDKIPEIMEVEQILDTETGXXXXXXXXXXXXXXIRPYLSGTGGGVLEL 575
           +MTLKMGIET+LRDKIPEIM+VEQI+DTETG              IRPYL+GTGGGVLEL
Sbjct: 121 SMTLKMGIETKLRDKIPEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGVLEL 180

Query: 576 VQIDGYVAKVRLSGPAATVMTVRVAITQKLREKIPAIAAVQLIE 707
           VQI+ YV KVRLSGPAA VMTVRVA+TQKLRE IPAIAAVQLI+
Sbjct: 181 VQINDYVVKVRLSGPAAGVMTVRVALTQKLRETIPAIAAVQLID 224


>ref|XP_003546416.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Glycine max]
          Length = 236

 Score =  277 bits (708), Expect = 3e-72
 Identities = 154/232 (66%), Positives = 172/232 (74%), Gaps = 8/232 (3%)
 Frame = +3

Query: 36  ARLNPFLPPPKATSTV-------HLSLLKNFTPEFSLISSKQNSFVRGK-FSIRHFFPSN 191
           A L P     KAT T+        L  LKN        SSK+N F+RG+  +I+ FF   
Sbjct: 5   ALLTPTTQSLKATRTIAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINIKQFFGLI 64

Query: 192 TSYRSRKQAGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQG 371
           + +  R +AG V++PRC LPLTEE+VEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQG
Sbjct: 65  SGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQG 124

Query: 372 ACGSCPSSTMTLKMGIETRLRDKIPEIMEVEQILDTETGXXXXXXXXXXXXXXIRPYLSG 551
           ACGSCPSS MTLKMGIETRLRDKIPEI+EVEQI+DTETG              IRPYL G
Sbjct: 125 ACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVLSEIRPYLVG 184

Query: 552 TGGGVLELVQIDGYVAKVRLSGPAATVMTVRVAITQKLREKIPAIAAVQLIE 707
           TGGG+LELVQI  YV KVRLSGPAA V TVRVA+TQKLR+KIPAIAAVQLI+
Sbjct: 185 TGGGILELVQIKDYVVKVRLSGPAAGVTTVRVALTQKLRDKIPAIAAVQLID 236