BLASTX nr result

ID: Coptis25_contig00025106 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025106
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78806.1| hypothetical protein VITISV_036806 [Vitis vinifera]    57   2e-06

>emb|CAN78806.1| hypothetical protein VITISV_036806 [Vitis vinifera]
          Length = 626

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = -3

Query: 287 LLSWVELMSRLKINLSHSKIYGVGKVENIVYFVNILGCEVKSFRTV*LAFPLGAKSENQK 108
           +L W E +SRL+INL+ S+I  VG+VE I+  V  LGC+V    +  L  PLGA ++   
Sbjct: 262 ILCWFEAVSRLRINLAKSEIIPVGEVEEILEMVVELGCKVGQLPSTYLGLPLGAPNKASS 321

Query: 107 PF-GVK*LRRWSRSLW 63
            + GV+   RW  +LW
Sbjct: 322 VWDGVEERVRWKLALW 337


Top