BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025027
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   223   2e-56
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi...   219   3e-55
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi...   216   1e-54
emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]   216   1e-54
ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|2...   213   2e-53

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  223 bits (567), Expect = 2e-56
 Identities = 114/185 (61%), Positives = 135/185 (72%)
 Frame = -1

Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378
           LGRAG ++EA ELIKSMP  P  IVW ALL ACRI+ NV++AEE  + L+ELEP   GNY
Sbjct: 415 LGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNY 474

Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198
           VLLSNIYS+A  WD+  N+RR MK   + K PG SSI V+N V+EF AGD++H  SK+I 
Sbjct: 475 VLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKIL 534

Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIV 18
           + L EI  RLK  GYAP T+S L D D  EKE AL HHSEKLA+AFGL+ST   + IRIV
Sbjct: 535 RMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIV 594

Query: 17  KNLRV 3
           KNLRV
Sbjct: 595 KNLRV 599


>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Vitis vinifera]
          Length = 738

 Score =  219 bits (557), Expect = 3e-55
 Identities = 108/185 (58%), Positives = 138/185 (74%)
 Frame = -1

Query: 557  LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378
            LGRAG  +EA  L+K+M M P   +WG+LL ACR+HGNV+L E  A  L ELEP++ G Y
Sbjct: 513  LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572

Query: 377  VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198
            VLLSNIY+ AGRWD+ A +R K+ +KG+ K PGCSSI V++VV+EF  GD+ H +S++IY
Sbjct: 573  VLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIY 632

Query: 197  KKLDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIV 18
            K LDEI   L+  G+ P TS  L+D+D + KE +L HHSEKLA+AFGLIST  +T IRIV
Sbjct: 633  KMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIV 692

Query: 17   KNLRV 3
            KNLRV
Sbjct: 693  KNLRV 697


>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  216 bits (551), Expect = 1e-54
 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = -1

Query: 557  LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378
            LGRAG +EEA ELI+ MPM P   VWGALL AC IH NV LAE+   +LIELEP + G Y
Sbjct: 517  LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 576

Query: 377  VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198
            VLLSNIY++AG+WD  + LR+ M++ G+ K+PGCSSI V+ +V+EF  GD +H  +K+IY
Sbjct: 577  VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 636

Query: 197  KKLDEIVTRLKTEGYAPCTSSALHDV-DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRI 21
             KLDEIV RL+T GY P  S  L  V + D KEQAL  HSEKLA+AFGLIST    PIRI
Sbjct: 637  AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 696

Query: 20   VKNLRV 3
            VKNLRV
Sbjct: 697  VKNLRV 702


>emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  216 bits (551), Expect = 1e-54
 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = -1

Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378
           LGRAG +EEA ELI+ MPM P   VWGALL AC IH NV LAE+   +LIELEP + G Y
Sbjct: 396 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 455

Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198
           VLLSNIY++AG+WD  + LR+ M++ G+ K+PGCSSI V+ +V+EF  GD +H  +K+IY
Sbjct: 456 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 515

Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDV-DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRI 21
            KLDEIV RL+T GY P  S  L  V + D KEQAL  HSEKLA+AFGLIST    PIRI
Sbjct: 516 AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 575

Query: 20  VKNLRV 3
           VKNLRV
Sbjct: 576 VKNLRV 581


>ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|222867324|gb|EEF04455.1|
           predicted protein [Populus trichocarpa]
          Length = 586

 Score =  213 bits (541), Expect = 2e-53
 Identities = 95/185 (51%), Positives = 135/185 (72%)
 Frame = -1

Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378
           LGRAG +EEA ELIK MP +P   +WG+LL ACR+H N  + E V  RL+E+EP++ GNY
Sbjct: 361 LGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNY 420

Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198
           V+LSN+Y+ AGRW++  N+R  M EK V+K+PG S I ++  ++ F+A DR+H R +E++
Sbjct: 421 VILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVF 480

Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIV 18
            K+ E++ + K  GY P  S  L+DVD ++KE+ LL HSEKLA+AFGLIST    P+R++
Sbjct: 481 LKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVI 540

Query: 17  KNLRV 3
           KNLR+
Sbjct: 541 KNLRI 545