BLASTX nr result
ID: Coptis25_contig00025027
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025027 (557 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi... 223 2e-56 ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi... 219 3e-55 ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi... 216 1e-54 emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera] 216 1e-54 ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|2... 213 2e-53 >ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera] Length = 640 Score = 223 bits (567), Expect = 2e-56 Identities = 114/185 (61%), Positives = 135/185 (72%) Frame = -1 Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378 LGRAG ++EA ELIKSMP P IVW ALL ACRI+ NV++AEE + L+ELEP GNY Sbjct: 415 LGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNY 474 Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198 VLLSNIYS+A WD+ N+RR MK + K PG SSI V+N V+EF AGD++H SK+I Sbjct: 475 VLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKIL 534 Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIV 18 + L EI RLK GYAP T+S L D D EKE AL HHSEKLA+AFGL+ST + IRIV Sbjct: 535 RMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIV 594 Query: 17 KNLRV 3 KNLRV Sbjct: 595 KNLRV 599 >ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] Length = 738 Score = 219 bits (557), Expect = 3e-55 Identities = 108/185 (58%), Positives = 138/185 (74%) Frame = -1 Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378 LGRAG +EA L+K+M M P +WG+LL ACR+HGNV+L E A L ELEP++ G Y Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572 Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198 VLLSNIY+ AGRWD+ A +R K+ +KG+ K PGCSSI V++VV+EF GD+ H +S++IY Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIY 632 Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIV 18 K LDEI L+ G+ P TS L+D+D + KE +L HHSEKLA+AFGLIST +T IRIV Sbjct: 633 KMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIV 692 Query: 17 KNLRV 3 KNLRV Sbjct: 693 KNLRV 697 >ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] Length = 743 Score = 216 bits (551), Expect = 1e-54 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 1/186 (0%) Frame = -1 Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378 LGRAG +EEA ELI+ MPM P VWGALL AC IH NV LAE+ +LIELEP + G Y Sbjct: 517 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 576 Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198 VLLSNIY++AG+WD + LR+ M++ G+ K+PGCSSI V+ +V+EF GD +H +K+IY Sbjct: 577 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 636 Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDV-DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRI 21 KLDEIV RL+T GY P S L V + D KEQAL HSEKLA+AFGLIST PIRI Sbjct: 637 AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 696 Query: 20 VKNLRV 3 VKNLRV Sbjct: 697 VKNLRV 702 >emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera] Length = 694 Score = 216 bits (551), Expect = 1e-54 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 1/186 (0%) Frame = -1 Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378 LGRAG +EEA ELI+ MPM P VWGALL AC IH NV LAE+ +LIELEP + G Y Sbjct: 396 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 455 Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198 VLLSNIY++AG+WD + LR+ M++ G+ K+PGCSSI V+ +V+EF GD +H +K+IY Sbjct: 456 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 515 Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDV-DMDEKEQALLHHSEKLAVAFGLISTDHKTPIRI 21 KLDEIV RL+T GY P S L V + D KEQAL HSEKLA+AFGLIST PIRI Sbjct: 516 AKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRI 575 Query: 20 VKNLRV 3 VKNLRV Sbjct: 576 VKNLRV 581 >ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa] Length = 586 Score = 213 bits (541), Expect = 2e-53 Identities = 95/185 (51%), Positives = 135/185 (72%) Frame = -1 Query: 557 LGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCGNY 378 LGRAG +EEA ELIK MP +P +WG+LL ACR+H N + E V RL+E+EP++ GNY Sbjct: 361 LGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNY 420 Query: 377 VLLSNIYSRAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIY 198 V+LSN+Y+ AGRW++ N+R M EK V+K+PG S I ++ ++ F+A DR+H R +E++ Sbjct: 421 VILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVF 480 Query: 197 KKLDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIV 18 K+ E++ + K GY P S L+DVD ++KE+ LL HSEKLA+AFGLIST P+R++ Sbjct: 481 LKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVI 540 Query: 17 KNLRV 3 KNLR+ Sbjct: 541 KNLRI 545