BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025002
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   205   3e-51
ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group] g...   197   6e-49
ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec...   196   2e-48
ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   195   3e-48
ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and...   194   8e-48

>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
           predicted protein [Populus trichocarpa]
          Length = 639

 Score =  205 bits (522), Expect = 3e-51
 Identities = 96/112 (85%), Positives = 105/112 (93%)
 Frame = +2

Query: 2   ATRNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYC 181
           ATRNAFDFKHV +F+RS++N  GPCVLFATPGMISGGFSLEVFKQWAP E+NLITLPGYC
Sbjct: 294 ATRNAFDFKHVHNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYC 353

Query: 182 VAGTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337
           VAGTVGHKLMSGK TKI +DK+TQ+DVRC+IHQLSFSPHTDSKGIMDL KFL
Sbjct: 354 VAGTVGHKLMSGKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTKFL 405


>ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
           gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza
           sativa Japonica Group] gi|113631340|dbj|BAF25021.1|
           Os09g0397900 [Oryza sativa Japonica Group]
           gi|218202115|gb|EEC84542.1| hypothetical protein
           OsI_31281 [Oryza sativa Indica Group]
           gi|222641522|gb|EEE69654.1| hypothetical protein
           OsJ_29268 [Oryza sativa Japonica Group]
          Length = 559

 Score =  197 bits (502), Expect = 6e-49
 Identities = 89/109 (81%), Positives = 100/109 (91%)
 Frame = +2

Query: 11  NAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAG 190
           N FDFKHVC FERS +N+ GPCVLFATPGMISGGFSLEVFK+WAPSE NL+TLPGYCVAG
Sbjct: 300 NPFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAG 359

Query: 191 TVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337
           T+GHKLMSGK T+I +DK+T +DVRC+IHQLSFSPHTDSKGIMDL +FL
Sbjct: 360 TIGHKLMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTEFL 408


>ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Brachypodium distachyon]
          Length = 553

 Score =  196 bits (498), Expect = 2e-48
 Identities = 89/110 (80%), Positives = 100/110 (90%)
 Frame = +2

Query: 8   RNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVA 187
           +N FDFKHVC FERS +ND GPCVLFATPGMISGGFSLEVFK+WA S+ NL+TLPGYCVA
Sbjct: 300 QNPFDFKHVCHFERSFINDPGPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVA 359

Query: 188 GTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337
           GT+GHKLMSGK T+I +DK+T VDVRC+IHQLSFSPHTDSKGIMDL +FL
Sbjct: 360 GTIGHKLMSGKPTRIDIDKDTHVDVRCQIHQLSFSPHTDSKGIMDLTEFL 409


>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223534732|gb|EEF36424.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 963

 Score =  195 bits (496), Expect = 3e-48
 Identities = 89/111 (80%), Positives = 105/111 (94%)
 Frame = +2

Query: 5   TRNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCV 184
           +RNAFDFK+V +F+RS+L+  GPCVLFATPGMISGGFSLEVFK+WAP E+NL+TLPGYCV
Sbjct: 295 SRNAFDFKNVYTFDRSLLDAPGPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCV 354

Query: 185 AGTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337
           AGT+GHKLMSGK +KI +DK+TQ+DVRC+IHQLSFSPHTD+KGIMDLVKFL
Sbjct: 355 AGTIGHKLMSGKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFL 405


>ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
           specificity factor subunit 3-II-like, partial [Cucumis
           sativus]
          Length = 472

 Score =  194 bits (492), Expect = 8e-48
 Identities = 90/111 (81%), Positives = 103/111 (92%)
 Frame = +2

Query: 5   TRNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCV 184
           TRNAFDFK+V  F+RSM++  GPCVLFATPGMIS GFSLEVFK+WAPS++NLITLPGYCV
Sbjct: 139 TRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCV 198

Query: 185 AGTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337
           AGTVGHKLMSGK TKI +DK TQ+DV+C++HQL+FSPHTDSKGIMDLVKFL
Sbjct: 199 AGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVKFL 249