BLASTX nr result
ID: Coptis25_contig00025002
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025002 (337 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2... 205 3e-51 ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group] g... 197 6e-49 ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec... 196 2e-48 ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 195 3e-48 ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 194 8e-48 >ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa] Length = 639 Score = 205 bits (522), Expect = 3e-51 Identities = 96/112 (85%), Positives = 105/112 (93%) Frame = +2 Query: 2 ATRNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYC 181 ATRNAFDFKHV +F+RS++N GPCVLFATPGMISGGFSLEVFKQWAP E+NLITLPGYC Sbjct: 294 ATRNAFDFKHVHNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYC 353 Query: 182 VAGTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337 VAGTVGHKLMSGK TKI +DK+TQ+DVRC+IHQLSFSPHTDSKGIMDL KFL Sbjct: 354 VAGTVGHKLMSGKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTKFL 405 >ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group] gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group] gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group] gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group] gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group] Length = 559 Score = 197 bits (502), Expect = 6e-49 Identities = 89/109 (81%), Positives = 100/109 (91%) Frame = +2 Query: 11 NAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVAG 190 N FDFKHVC FERS +N+ GPCVLFATPGMISGGFSLEVFK+WAPSE NL+TLPGYCVAG Sbjct: 300 NPFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAG 359 Query: 191 TVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337 T+GHKLMSGK T+I +DK+T +DVRC+IHQLSFSPHTDSKGIMDL +FL Sbjct: 360 TIGHKLMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTEFL 408 >ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Brachypodium distachyon] Length = 553 Score = 196 bits (498), Expect = 2e-48 Identities = 89/110 (80%), Positives = 100/110 (90%) Frame = +2 Query: 8 RNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCVA 187 +N FDFKHVC FERS +ND GPCVLFATPGMISGGFSLEVFK+WA S+ NL+TLPGYCVA Sbjct: 300 QNPFDFKHVCHFERSFINDPGPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVA 359 Query: 188 GTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337 GT+GHKLMSGK T+I +DK+T VDVRC+IHQLSFSPHTDSKGIMDL +FL Sbjct: 360 GTIGHKLMSGKPTRIDIDKDTHVDVRCQIHQLSFSPHTDSKGIMDLTEFL 409 >ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] Length = 963 Score = 195 bits (496), Expect = 3e-48 Identities = 89/111 (80%), Positives = 105/111 (94%) Frame = +2 Query: 5 TRNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCV 184 +RNAFDFK+V +F+RS+L+ GPCVLFATPGMISGGFSLEVFK+WAP E+NL+TLPGYCV Sbjct: 295 SRNAFDFKNVYTFDRSLLDAPGPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCV 354 Query: 185 AGTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337 AGT+GHKLMSGK +KI +DK+TQ+DVRC+IHQLSFSPHTD+KGIMDLVKFL Sbjct: 355 AGTIGHKLMSGKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFL 405 >ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like, partial [Cucumis sativus] Length = 472 Score = 194 bits (492), Expect = 8e-48 Identities = 90/111 (81%), Positives = 103/111 (92%) Frame = +2 Query: 5 TRNAFDFKHVCSFERSMLNDRGPCVLFATPGMISGGFSLEVFKQWAPSEINLITLPGYCV 184 TRNAFDFK+V F+RSM++ GPCVLFATPGMIS GFSLEVFK+WAPS++NLITLPGYCV Sbjct: 139 TRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCV 198 Query: 185 AGTVGHKLMSGKATKIQVDKETQVDVRCKIHQLSFSPHTDSKGIMDLVKFL 337 AGTVGHKLMSGK TKI +DK TQ+DV+C++HQL+FSPHTDSKGIMDLVKFL Sbjct: 199 AGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVKFL 249