BLASTX nr result
ID: Coptis25_contig00025000
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025000 (494 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera] 114 8e-24 ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23 emb|CBI28459.3| unnamed protein product [Vitis vinifera] 105 4e-21 ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containi... 103 1e-20 ref|XP_002511099.1| pentatricopeptide repeat-containing protein,... 96 3e-18 >emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera] Length = 1024 Score = 114 bits (285), Expect = 8e-24 Identities = 62/138 (44%), Positives = 90/138 (65%) Frame = -1 Query: 416 VLTNRNNFTKKPPSFLKPFHLFNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNL 237 +LT++N FT F K F+T++ + + ++I++ LK +NWK +M SSHIP+ L Sbjct: 13 LLTDQNGFTNT--KFFKSIE-FSTSTSTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKL 69 Query: 236 NPEIIQLVVQQNKITHLKRLLTFFYWSSTQMGGNKPQNFNSFSFLAVYLCNAKLYGPAND 57 NP++I+ V+ QN++ KRLL FFYWS +QMG PQ +SFS LAV LCN++L+G AN Sbjct: 70 NPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMG--VPQFLDSFSILAVQLCNSELFGLANG 127 Query: 56 LLDTFIRAHSPLSAILSS 3 +L IR S+IL S Sbjct: 128 VLTQMIRTPYSSSSILDS 145 >ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera] Length = 935 Score = 114 bits (284), Expect = 1e-23 Identities = 62/138 (44%), Positives = 90/138 (65%) Frame = -1 Query: 416 VLTNRNNFTKKPPSFLKPFHLFNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNL 237 +LT++N FT F K F+T++ + + ++I++ LK +NWK +M SSHIP+ L Sbjct: 11 LLTDQNGFTNT--KFFKSIE-FSTSTPTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKL 67 Query: 236 NPEIIQLVVQQNKITHLKRLLTFFYWSSTQMGGNKPQNFNSFSFLAVYLCNAKLYGPAND 57 NP++I+ V+ QN++ KRLL FFYWS +QMG PQ +SFS LAV LCN++L+G AN Sbjct: 68 NPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMG--VPQFLDSFSILAVQLCNSELFGLANG 125 Query: 56 LLDTFIRAHSPLSAILSS 3 +L IR S+IL S Sbjct: 126 VLTQMIRTPYSSSSILDS 143 >emb|CBI28459.3| unnamed protein product [Vitis vinifera] Length = 973 Score = 105 bits (262), Expect = 4e-21 Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 2/131 (1%) Frame = -1 Query: 398 NFTKKPPSFLKPFHLFNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNLNPEIIQ 219 +F KP F+++ +N SV EIT +L HNW+ LMESS IP LN +II+ Sbjct: 8 SFMAKPRPISHKAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIR 67 Query: 218 LVVQQNKITHLKRLLTFFYWSSTQMG-GNKPQNFNSFSFLAVYLCNAKLYGPANDLLDTF 42 V+ QN++ KRLL FFYWS +MG Q+ + S LAV LCN+ YGPA+DL+ Sbjct: 68 SVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCI 127 Query: 41 IR-AHSPLSAI 12 IR + SPL+ + Sbjct: 128 IRNSDSPLAVL 138 >ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera] Length = 1011 Score = 103 bits (258), Expect = 1e-20 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 2/116 (1%) Frame = -1 Query: 353 FNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNLNPEIIQLVVQQNKITHLKRLL 174 F+++ +N SV EIT +L HNW+ LMESS IP LN +II+ V+ QN++ KRLL Sbjct: 14 FSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIRSVILQNQVGDPKRLL 73 Query: 173 TFFYWSSTQMG-GNKPQNFNSFSFLAVYLCNAKLYGPANDLLDTFIR-AHSPLSAI 12 FFYWS +MG Q+ + S LAV LCN+ YGPA+DL+ IR + SPL+ + Sbjct: 74 NFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCIIRNSDSPLAVL 129 >ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 1151 Score = 95.9 bits (237), Expect = 3e-18 Identities = 46/117 (39%), Positives = 81/117 (69%) Frame = -1 Query: 353 FNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNLNPEIIQLVVQQNKITHLKRLL 174 F+T + +++ ++V+EIT++LK NW++L+ESS +PN LNP+++ LV++QN++ KRL Sbjct: 32 FSTNADTNQSDNTVKEITSLLKQKNWQFLIESSPLPNKLNPDVVFLVIKQNQVIDPKRLH 91 Query: 173 TFFYWSSTQMGGNKPQNFNSFSFLAVYLCNAKLYGPANDLLDTFIRAHSPLSAILSS 3 FF W +++ + QN ++FS L++ LCN+ L+G A ++L+ I +P IL S Sbjct: 92 GFFNWVNSRTVFS--QNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILDS 146