BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025000
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]   114   8e-24
ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23
emb|CBI28459.3| unnamed protein product [Vitis vinifera]              105   4e-21
ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_002511099.1| pentatricopeptide repeat-containing protein,...    96   3e-18

>emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  114 bits (285), Expect = 8e-24
 Identities = 62/138 (44%), Positives = 90/138 (65%)
 Frame = -1

Query: 416 VLTNRNNFTKKPPSFLKPFHLFNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNL 237
           +LT++N FT     F K    F+T++   +  +  ++I++ LK +NWK +M SSHIP+ L
Sbjct: 13  LLTDQNGFTNT--KFFKSIE-FSTSTSTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKL 69

Query: 236 NPEIIQLVVQQNKITHLKRLLTFFYWSSTQMGGNKPQNFNSFSFLAVYLCNAKLYGPAND 57
           NP++I+ V+ QN++   KRLL FFYWS +QMG   PQ  +SFS LAV LCN++L+G AN 
Sbjct: 70  NPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMG--VPQFLDSFSILAVQLCNSELFGLANG 127

Query: 56  LLDTFIRAHSPLSAILSS 3
           +L   IR     S+IL S
Sbjct: 128 VLTQMIRTPYSSSSILDS 145


>ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  114 bits (284), Expect = 1e-23
 Identities = 62/138 (44%), Positives = 90/138 (65%)
 Frame = -1

Query: 416 VLTNRNNFTKKPPSFLKPFHLFNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNL 237
           +LT++N FT     F K    F+T++   +  +  ++I++ LK +NWK +M SSHIP+ L
Sbjct: 11  LLTDQNGFTNT--KFFKSIE-FSTSTPTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKL 67

Query: 236 NPEIIQLVVQQNKITHLKRLLTFFYWSSTQMGGNKPQNFNSFSFLAVYLCNAKLYGPAND 57
           NP++I+ V+ QN++   KRLL FFYWS +QMG   PQ  +SFS LAV LCN++L+G AN 
Sbjct: 68  NPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMG--VPQFLDSFSILAVQLCNSELFGLANG 125

Query: 56  LLDTFIRAHSPLSAILSS 3
           +L   IR     S+IL S
Sbjct: 126 VLTQMIRTPYSSSSILDS 143


>emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  105 bits (262), Expect = 4e-21
 Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
 Frame = -1

Query: 398 NFTKKPPSFLKPFHLFNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNLNPEIIQ 219
           +F  KP         F+++    +N  SV EIT +L  HNW+ LMESS IP  LN +II+
Sbjct: 8   SFMAKPRPISHKAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIR 67

Query: 218 LVVQQNKITHLKRLLTFFYWSSTQMG-GNKPQNFNSFSFLAVYLCNAKLYGPANDLLDTF 42
            V+ QN++   KRLL FFYWS  +MG     Q+ +  S LAV LCN+  YGPA+DL+   
Sbjct: 68  SVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCI 127

Query: 41  IR-AHSPLSAI 12
           IR + SPL+ +
Sbjct: 128 IRNSDSPLAVL 138


>ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  103 bits (258), Expect = 1e-20
 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
 Frame = -1

Query: 353 FNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNLNPEIIQLVVQQNKITHLKRLL 174
           F+++    +N  SV EIT +L  HNW+ LMESS IP  LN +II+ V+ QN++   KRLL
Sbjct: 14  FSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIRSVILQNQVGDPKRLL 73

Query: 173 TFFYWSSTQMG-GNKPQNFNSFSFLAVYLCNAKLYGPANDLLDTFIR-AHSPLSAI 12
            FFYWS  +MG     Q+ +  S LAV LCN+  YGPA+DL+   IR + SPL+ +
Sbjct: 74  NFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCIIRNSDSPLAVL 129


>ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550214|gb|EEF51701.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1151

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 46/117 (39%), Positives = 81/117 (69%)
 Frame = -1

Query: 353 FNTTSQDDKNSSSVEEITNILKHHNWKYLMESSHIPNNLNPEIIQLVVQQNKITHLKRLL 174
           F+T +  +++ ++V+EIT++LK  NW++L+ESS +PN LNP+++ LV++QN++   KRL 
Sbjct: 32  FSTNADTNQSDNTVKEITSLLKQKNWQFLIESSPLPNKLNPDVVFLVIKQNQVIDPKRLH 91

Query: 173 TFFYWSSTQMGGNKPQNFNSFSFLAVYLCNAKLYGPANDLLDTFIRAHSPLSAILSS 3
            FF W +++   +  QN ++FS L++ LCN+ L+G A ++L+  I   +P   IL S
Sbjct: 92  GFFNWVNSRTVFS--QNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILDS 146