BLASTX nr result

ID: Coptis25_contig00024993 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024993
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536185.1| PREDICTED: PHD finger protein At1g33420-like...    69   4e-10
ref|XP_003555537.1| PREDICTED: PHD finger protein At1g33420-like...    67   2e-09
ref|XP_004165011.1| PREDICTED: PHD finger protein At1g33420-like...    64   2e-08
ref|XP_004144350.1| PREDICTED: PHD finger protein At1g33420-like...    64   2e-08
ref|XP_003622362.1| PHD finger protein [Medicago truncatula] gi|...    63   3e-08

>ref|XP_003536185.1| PREDICTED: PHD finger protein At1g33420-like [Glycine max]
          Length = 707

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
 Frame = -2

Query: 224 LSHLDYRKAVDCLSEIPLSLFYQARTPRTSLQDVITFYQALSECQLLTIKDLFCFLM--- 54
           L+H  Y+ AV+ LS +PLS F Q + P + +QD+I +YQ+LSE +L+ I+DLFCF+M   
Sbjct: 268 LTHESYKSAVESLSNLPLSTFSQGKMPDSRVQDMIKYYQSLSEHELVNIRDLFCFIMGLI 327

Query: 53  GPFHKT 36
           G  HKT
Sbjct: 328 GDAHKT 333


>ref|XP_003555537.1| PREDICTED: PHD finger protein At1g33420-like [Glycine max]
          Length = 699

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
 Frame = -2

Query: 224 LSHLDYRKAVDCLSEIPLSLFYQARTPRTSLQDVITFYQALSECQLLTIKDLFCFLM--- 54
           L+H  Y+ AV+ LS +PLS F   R P + ++D+I +YQ+LSE +L+ I+DLFCF+M   
Sbjct: 268 LTHEAYKSAVESLSNLPLSTFSHGRMPNSRVEDMIKYYQSLSEHELVNIRDLFCFIMGLI 327

Query: 53  GPFHKT 36
           G  HKT
Sbjct: 328 GDAHKT 333


>ref|XP_004165011.1| PREDICTED: PHD finger protein At1g33420-like [Cucumis sativus]
          Length = 668

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = -2

Query: 209 YRKAVDCLSEIPLSLFY-QARTPRTSLQDVITFYQALSECQLLTIKDLFCFLMGPFHKTK 33
           Y+ AV+ LS +PLS+F  Q R PR+ LQD+I +YQ+LSE +L+ ++DLF FLM   H  +
Sbjct: 247 YKMAVETLSSLPLSIFTSQGRKPRSHLQDIILYYQSLSERKLVNVRDLFKFLMSLIHNVR 306

Query: 32  QLQITS 15
           +   T+
Sbjct: 307 KSSSTT 312


>ref|XP_004144350.1| PREDICTED: PHD finger protein At1g33420-like [Cucumis sativus]
          Length = 668

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = -2

Query: 209 YRKAVDCLSEIPLSLFY-QARTPRTSLQDVITFYQALSECQLLTIKDLFCFLMGPFHKTK 33
           Y+ AV+ LS +PLS+F  Q R PR+ LQD+I +YQ+LSE +L+ ++DLF FLM   H  +
Sbjct: 247 YKMAVETLSSLPLSIFTSQGRKPRSHLQDIILYYQSLSERKLVNVRDLFKFLMSLIHNVR 306

Query: 32  QLQITS 15
           +   T+
Sbjct: 307 KSSSTT 312


>ref|XP_003622362.1| PHD finger protein [Medicago truncatula]
           gi|355497377|gb|AES78580.1| PHD finger protein [Medicago
           truncatula]
          Length = 655

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/61 (45%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
 Frame = -2

Query: 209 YRKAVDCLSEIPLSLFY-QARTPRTSLQDVITFYQALSECQLLTIKDLFCFLMGPFHKTK 33
           Y+ AV+ LS +PLS+F  Q + P + +QD+I +Y++LSE +L+ ++DLFCFLMG  H  +
Sbjct: 222 YKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYRSLSEHELVNMRDLFCFLMGMLHDAR 281

Query: 32  Q 30
           +
Sbjct: 282 K 282


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