BLASTX nr result
ID: Coptis25_contig00024972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00024972
(1367 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBG76268.1| OO_Ba0005L10-OO_Ba0081K17.19 [Oryza officinalis] 60 6e-14
gb|ABA95102.1| retrotransposon protein, putative, unclassified [... 59 7e-13
gb|AAL76190.1|AC092173_2 Putative gag-pol polyprotein [Oryza sat... 60 3e-12
emb|CAH66133.1| H0622G10.2 [Oryza sativa Indica Group] 59 2e-11
gb|ABA93861.2| retrotransposon protein, putative, unclassified [... 57 4e-11
>emb|CBG76268.1| OO_Ba0005L10-OO_Ba0081K17.19 [Oryza officinalis]
Length = 1969
Score = 60.1 bits (144), Expect(3) = 6e-14
Identities = 33/90 (36%), Positives = 43/90 (47%)
Frame = -3
Query: 477 WALFSWRFDLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISR 298
W W D+IG IN + L T +FTKWVET+PL + K F KE+II R
Sbjct: 1673 WPFRGWGIDMIGQINPPSSKGHKYILVATDYFTKWVETVPLKKVDSKDAIQFVKEYIIYR 1732
Query: 297 LGNRKHIISDGGIPFVNQHIAYMLEDCGIK 208
G + I +D G FV+ + IK
Sbjct: 1733 FGLPQTITTDQGSIFVSDEFVQFADSMDIK 1762
Score = 37.4 bits (85), Expect(3) = 6e-14
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -1
Query: 206 VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 90
+ S+PY + NGQAE +NKTL + I ++EQP+ W T
Sbjct: 1764 LNSSPYYAQANGQAEASNKTLIK-LIKRKINEQPRQWHT 1801
Score = 26.9 bits (58), Expect(3) = 6e-14
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 613 LLSIWYS*PAIEDDTAKFVKKCKLCQLYG*DIHSRANPLYPI 488
L + Y P + +D K+ K C+ CQ +G + A+ ++PI
Sbjct: 1628 LKRVGYFWPTMLEDCFKYYKGCQDCQKFGAIQRAPASAMHPI 1669
>gb|ABA95102.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2096
Score = 59.3 bits (142), Expect(3) = 7e-13
Identities = 32/90 (35%), Positives = 42/90 (46%)
Frame = -3
Query: 477 WALFSWRFDLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISR 298
W W D+IG IN + L T + TKWVE +PL + K F KEHII R
Sbjct: 1800 WPFRGWGIDMIGQINPPSSKGHKYILVATDYITKWVEAVPLKKVDSKDAIQFVKEHIIYR 1859
Query: 297 LGNRKHIISDGGIPFVNQHIAYMLEDCGIK 208
G + I +D G FV+ + GI+
Sbjct: 1860 FGLPQTITTDQGSIFVSDEFVRFADSMGIR 1889
Score = 35.0 bits (79), Expect(3) = 7e-13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -1
Query: 206 VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 90
+ S+PY + NGQAE +NK+L + I + EQP+ W T
Sbjct: 1891 LNSSPYYAQANGQAEASNKSLIK-LIKRKIDEQPRQWHT 1928
Score = 26.2 bits (56), Expect(3) = 7e-13
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 604 IWYS*PAIEDDTAKFVKKCKLCQLYG*DIHSRANPLYPI 488
+ Y P + +D K+ K C+ CQ +G + A+ ++PI
Sbjct: 1758 VGYFWPTMLEDCFKYYKGCQDCQKFGAIQRAPASVMHPI 1796
>gb|AAL76190.1|AC092173_2 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31430542|gb|AAP52444.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1393
Score = 60.1 bits (144), Expect(3) = 3e-12
Identities = 34/90 (37%), Positives = 42/90 (46%)
Frame = -3
Query: 477 WALFSWRFDLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISR 298
W L W D+IG IN + L T +FTKWVE IPL + F +EHII R
Sbjct: 1232 WPLRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYR 1291
Query: 297 LGNRKHIISDGGIPFVNQHIAYMLEDCGIK 208
G + I D G FV+ + GIK
Sbjct: 1292 FGLPQTITMDQGSIFVSDEFVQFADSVGIK 1321
Score = 31.6 bits (70), Expect(3) = 3e-12
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 206 VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 90
+ S+PY + NGQAE +NK+L + I + + P+ W T
Sbjct: 1323 LNSSPYYAQANGQAEASNKSLIK-LIKRKISDYPRQWHT 1360
Score = 26.9 bits (58), Expect(3) = 3e-12
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 598 YS*PAIEDDTAKFVKKCKLCQLYG*DIHSRANPLYPI 488
Y P + DD ++ K C++CQ +G + A+ + PI
Sbjct: 1192 YFWPTMLDDCFRYYKGCQVCQKFGAIQRAPASAMNPI 1228
>emb|CAH66133.1| H0622G10.2 [Oryza sativa Indica Group]
Length = 1224
Score = 59.3 bits (142), Expect(3) = 2e-11
Identities = 33/90 (36%), Positives = 42/90 (46%)
Frame = -3
Query: 477 WALFSWRFDLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISR 298
W W D+IG IN + L T +FTKWVE IPL + F +EHII R
Sbjct: 928 WPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYR 987
Query: 297 LGNRKHIISDGGIPFVNQHIAYMLEDCGIK 208
G + I +D G FV+ + GIK
Sbjct: 988 FGLPQTITTDQGSIFVSDEFVQFADSVGIK 1017
Score = 31.6 bits (70), Expect(3) = 2e-11
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 206 VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 90
+ S+PY + NGQAE +NK+L + I + + P+ W T
Sbjct: 1019 LNSSPYYAQANGQAEASNKSLIK-LIKRKISDYPRQWHT 1056
Score = 24.6 bits (52), Expect(3) = 2e-11
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 598 YS*PAIEDDTAKFVKKCKLCQLYG*DIHSRANPLYPI 488
Y P + +D K+ K C+ CQ +G + A+ + PI
Sbjct: 888 YFWPTMLEDCFKYYKGCQDCQKFGVIQRAPASAMNPI 924
>gb|ABA93861.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 533
Score = 57.4 bits (137), Expect(3) = 4e-11
Identities = 32/90 (35%), Positives = 41/90 (45%)
Frame = -3
Query: 477 WALFSWRFDLIGPINSTIIQETHMDLGTTGFFTKWVETIPLTVSNEKTFATFTKEHIISR 298
W W D+IG IN + L T +FTKWVE PL + F +EHII R
Sbjct: 335 WPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEATPLKKVDSGDAIQFVQEHIIYR 394
Query: 297 LGNRKHIISDGGIPFVNQHIAYMLEDCGIK 208
G + I +D G FV+ + GIK
Sbjct: 395 FGIPQTITTDQGSIFVSDEFVQFADSMGIK 424
Score = 31.6 bits (70), Expect(3) = 4e-11
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 206 VRSTPYSPKGNGQAEPTNKTLHRDFICTTVHEQPKGWPT 90
+ S+PY + NGQAE +NK+L + I + + P+ W T
Sbjct: 426 LNSSPYYAQANGQAEASNKSLIK-LIKRKIFDYPRQWHT 463
Score = 25.8 bits (55), Expect(3) = 4e-11
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 643 TKENTNSSQNLLS-IWYS*PAIEDDTAKFVKKCKLCQLYG*DIHSRANPLYPI 488
T+++ + + LL + Y P + +D K+ K C+ CQ +G + A+ + PI
Sbjct: 279 TRQSAHKMKWLLRRVGYFWPTMLEDCFKYYKGCQGCQKFGAIQRAPASAMNPI 331