BLASTX nr result

ID: Coptis25_contig00024925 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024925
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329728.1| predicted protein [Populus trichocarpa] gi|2...   150   8e-35
ref|XP_002264379.2| PREDICTED: UPF0176 protein pc0378-like [Viti...   140   8e-32
ref|XP_004159612.1| PREDICTED: rhodanese-like domain-containing ...   139   2e-31
ref|XP_004136802.1| PREDICTED: rhodanese-like domain-containing ...   139   2e-31
ref|XP_003532550.1| PREDICTED: LOW QUALITY PROTEIN: UPF0176 prot...   135   4e-30

>ref|XP_002329728.1| predicted protein [Populus trichocarpa] gi|222870636|gb|EEF07767.1|
           predicted protein [Populus trichocarpa]
          Length = 460

 Score =  150 bits (380), Expect = 8e-35
 Identities = 74/108 (68%), Positives = 88/108 (81%)
 Frame = -1

Query: 326 CYSFPPSSTKRAYSDDTSSSSFIVVNFYHFVYIQDPHDLVSTHLSFLKGLDICGRIYLNE 147
           C + P SST    S+D     FIVVNFY FV+I DPH+ V+ HLSFLKGLDI GRIY+NE
Sbjct: 74  CATIPSSSTVANPSND-----FIVVNFYRFVFINDPHEEVAKHLSFLKGLDIHGRIYVNE 128

Query: 146 QGINAQFSGPSVDALMYLEWIKEDSRFSDILVQISPSVNGHSFPRLKL 3
           QGINAQ+SGPS DAL Y+EW++ED RFSDILVQISP++NGH+FP+LKL
Sbjct: 129 QGINAQYSGPSKDALAYVEWLREDFRFSDILVQISPALNGHAFPKLKL 176


>ref|XP_002264379.2| PREDICTED: UPF0176 protein pc0378-like [Vitis vinifera]
          Length = 441

 Score =  140 bits (354), Expect = 8e-32
 Identities = 66/95 (69%), Positives = 80/95 (84%)
 Frame = -1

Query: 287 SDDTSSSSFIVVNFYHFVYIQDPHDLVSTHLSFLKGLDICGRIYLNEQGINAQFSGPSVD 108
           S+ ++   FIVVNFY FV+IQDP   VS HLSFL+G DI GR+Y+NEQGINAQ+SGPS D
Sbjct: 77  SELSNDGGFIVVNFYRFVFIQDPELEVSKHLSFLQGFDIHGRVYINEQGINAQYSGPSKD 136

Query: 107 ALMYLEWIKEDSRFSDILVQISPSVNGHSFPRLKL 3
           AL Y+EW++ED RFSDILVQISP+ NGH+FP+LKL
Sbjct: 137 ALAYVEWLREDHRFSDILVQISPASNGHAFPKLKL 171


>ref|XP_004159612.1| PREDICTED: rhodanese-like domain-containing protein 8,
           chloroplastic-like [Cucumis sativus]
          Length = 431

 Score =  139 bits (351), Expect = 2e-31
 Identities = 68/133 (51%), Positives = 87/133 (65%)
 Frame = -1

Query: 401 KWRPIFRIHTRGSKIFPTCLFKTSVCYSFPPSSTKRAYSDDTSSSSFIVVNFYHFVYIQD 222
           KW+P   I    + +  +  F +    +  PS   R      S   F+VVNFYHFV+I+D
Sbjct: 40  KWKPTQIIAVSSASLTQSNTFHSVSLSNLGPSEEHRQLLPHISEEDFVVVNFYHFVFIED 99

Query: 221 PHDLVSTHLSFLKGLDICGRIYLNEQGINAQFSGPSVDALMYLEWIKEDSRFSDILVQIS 42
           P   VS HL F++ LDI GRIYLNEQGINAQ+SGPS  AL Y  W++ED RF DILVQ+S
Sbjct: 100 PQAEVSKHLYFMRDLDIHGRIYLNEQGINAQYSGPSKHALAYANWLREDPRFLDILVQVS 159

Query: 41  PSVNGHSFPRLKL 3
           P++N H+FP+LKL
Sbjct: 160 PAINDHAFPKLKL 172


>ref|XP_004136802.1| PREDICTED: rhodanese-like domain-containing protein 8,
           chloroplastic-like [Cucumis sativus]
          Length = 431

 Score =  139 bits (351), Expect = 2e-31
 Identities = 68/133 (51%), Positives = 87/133 (65%)
 Frame = -1

Query: 401 KWRPIFRIHTRGSKIFPTCLFKTSVCYSFPPSSTKRAYSDDTSSSSFIVVNFYHFVYIQD 222
           KW+P   I    + +  +  F +    +  PS   R      S   F+VVNFYHFV+I+D
Sbjct: 40  KWKPTQIIAVSSASLTQSNTFHSVSLSNLGPSEEHRQLLPHISEEDFVVVNFYHFVFIED 99

Query: 221 PHDLVSTHLSFLKGLDICGRIYLNEQGINAQFSGPSVDALMYLEWIKEDSRFSDILVQIS 42
           P   VS HL F++ LDI GRIYLNEQGINAQ+SGPS  AL Y  W++ED RF DILVQ+S
Sbjct: 100 PQAEVSKHLYFMRDLDIHGRIYLNEQGINAQYSGPSKHALAYANWLREDPRFLDILVQVS 159

Query: 41  PSVNGHSFPRLKL 3
           P++N H+FP+LKL
Sbjct: 160 PAINDHAFPKLKL 172


>ref|XP_003532550.1| PREDICTED: LOW QUALITY PROTEIN: UPF0176 protein pc0378-like
           [Glycine max]
          Length = 436

 Score =  135 bits (339), Expect = 4e-30
 Identities = 70/133 (52%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
 Frame = -1

Query: 395 RPIFRIHTRGSKIFPTCLFKTSVCYSFPPSSTKRAYSDDTSSSSFIVVNFYHFVYIQDPH 216
           RP+F+     S     C    S      PSS+++ +        F+VVNFYHFV+IQDP 
Sbjct: 40  RPLFKFSNFSSLALTHCKLVPSALPLTQPSSSRKDFD-------FVVVNFYHFVFIQDPQ 92

Query: 215 DLVSTHLSFLK--GLDICGRIYLNEQGINAQFSGPSVDALMYLEWIKEDSRFSDILVQIS 42
             V+ H SFL+  GLDI GR+YLNEQGINAQ+SGPS DA+ Y+ W+++D+RFS+ILVQIS
Sbjct: 93  AEVAKHRSFLELEGLDINGRVYLNEQGINAQYSGPSKDAMAYVNWLRKDNRFSNILVQIS 152

Query: 41  PSVNGHSFPRLKL 3
           PS  GH+FP LKL
Sbjct: 153 PSEKGHTFPILKL 165


Top