BLASTX nr result

ID: Coptis25_contig00024901 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024901
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633150.1| PREDICTED: uncharacterized protein LOC100854...   118   6e-25
ref|XP_003579375.1| PREDICTED: uncharacterized protein LOC100828...   101   7e-20
ref|XP_002532309.1| conserved hypothetical protein [Ricinus comm...   101   7e-20
ref|NP_001054056.2| Os04g0644200 [Oryza sativa Japonica Group] g...    99   5e-19
ref|XP_002325176.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19

>ref|XP_003633150.1| PREDICTED: uncharacterized protein LOC100854497 [Vitis vinifera]
          Length = 427

 Score =  118 bits (295), Expect = 6e-25
 Identities = 54/89 (60%), Positives = 69/89 (77%)
 Frame = -2

Query: 433 VSTAFARVRTCWKLLSTKWKEECVEFLPFVILTGCLLHNFVIKCGDLVPDEIEVQSEDQE 254
           VSTAF RVR  W+LL+  WKEEC+EF PFVI+TGCLLHNF+IKC + +PDE   +S++ E
Sbjct: 339 VSTAFCRVRARWQLLAKLWKEECIEFFPFVIVTGCLLHNFLIKCSEPLPDENAGRSKEGE 398

Query: 253 FPVFEGKGNVNGERIRDTLACHLCLVSQR 167
            P+++GK N +G+RIRD LA HL  VS R
Sbjct: 399 LPIYQGKMNESGQRIRDALASHLSRVSLR 427


>ref|XP_003579375.1| PREDICTED: uncharacterized protein LOC100828950 [Brachypodium
           distachyon]
          Length = 443

 Score =  101 bits (251), Expect = 7e-20
 Identities = 49/88 (55%), Positives = 59/88 (67%)
 Frame = -2

Query: 433 VSTAFARVRTCWKLLSTKWKEECVEFLPFVILTGCLLHNFVIKCGDLVPDEIEVQSEDQE 254
           V  AF  VR  WKLL   WK EC E LP+V++ GCLLHNF+IKCG+ +PD   V +E   
Sbjct: 352 VERAFGHVRARWKLLGESWKGECQEALPYVVVAGCLLHNFLIKCGEPMPDADGVPAEADV 411

Query: 253 FPVFEGKGNVNGERIRDTLACHLCLVSQ 170
           F  FEG+ +  GERIRD LA HL LVS+
Sbjct: 412 FVDFEGERDREGERIRDVLAAHLSLVSR 439


>ref|XP_002532309.1| conserved hypothetical protein [Ricinus communis]
           gi|223527978|gb|EEF30061.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 420

 Score =  101 bits (251), Expect = 7e-20
 Identities = 50/90 (55%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
 Frame = -2

Query: 433 VSTAFARVRTCWKLLSTKWKEECVEFLPFVILTGCLLHNFVIKCGDLVPDEIEVQSE-DQ 257
           V+TAF RV+  W+LL+ +WKEECVEF PFVI+ GCLLHNF+IKC + V +E    SE ++
Sbjct: 330 VNTAFGRVKARWQLLARRWKEECVEFFPFVIVMGCLLHNFLIKCSEPVAEESVGCSEVEE 389

Query: 256 EFPVFEGKGNVNGERIRDTLACHLCLVSQR 167
           E PVF G+ +  G+RIR  LA HL   S R
Sbjct: 390 ELPVFGGEADERGQRIRVALAKHLSRASMR 419


>ref|NP_001054056.2| Os04g0644200 [Oryza sativa Japonica Group]
           gi|38344888|emb|CAD41911.2| OSJNBa0033G05.12 [Oryza
           sativa Japonica Group] gi|125591833|gb|EAZ32183.1|
           hypothetical protein OsJ_16389 [Oryza sativa Japonica
           Group] gi|255675827|dbj|BAF15970.2| Os04g0644200 [Oryza
           sativa Japonica Group]
          Length = 435

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 47/88 (53%), Positives = 61/88 (69%)
 Frame = -2

Query: 433 VSTAFARVRTCWKLLSTKWKEECVEFLPFVILTGCLLHNFVIKCGDLVPDEIEVQSEDQE 254
           V  AF  VR+ W+LL   WK EC E LP+V++ GCLLHNF+IKCG+  P+EI+  +  + 
Sbjct: 346 VRNAFGHVRSRWRLLDECWKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQEGAAAEL 405

Query: 253 FPVFEGKGNVNGERIRDTLACHLCLVSQ 170
           F  FEG+ +  GERIRD LA HL LVS+
Sbjct: 406 FSDFEGEKDKEGERIRDVLAVHLSLVSR 433


>ref|XP_002325176.1| predicted protein [Populus trichocarpa] gi|222866610|gb|EEF03741.1|
           predicted protein [Populus trichocarpa]
          Length = 421

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 48/90 (53%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
 Frame = -2

Query: 433 VSTAFARVRTCWKLLSTKWKEECVEFLPFVILTGCLLHNFVIKCGDLVPDE-IEVQSEDQ 257
           VSTAF RV+  W+LL+ +WKE+ +EFLPFVI+ GC+LHNF+IK G+ +P+E +    + +
Sbjct: 331 VSTAFGRVKARWQLLARRWKEDSLEFLPFVIVMGCVLHNFLIKWGEPLPEESVGGCLKGE 390

Query: 256 EFPVFEGKGNVNGERIRDTLACHLCLVSQR 167
           E  VFEG+G+  G+ IRD LA HL L S R
Sbjct: 391 ELLVFEGEGDETGQTIRDALAQHLSLASMR 420


Top