BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024839
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    58   9e-07

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
 Frame = -1

Query: 288 WIPPDRDTIKVNCDCSSLENTGSGGLGLIFRDE---FLKEFILKVWA*SQLTSYEVECNA 118
           W+PP    +K+NCD S + +   G +G+IFR     F   F   +      T+ E E +A
Sbjct: 245 WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNI---GYATALEAEYSA 301

Query: 117 VVRAVELTLTRNSLNIWLETDSKSVAQAFN-NDAIVWNL 4
            + A+E     +  NIW+ETDS +V +AF+ N  + W +
Sbjct: 302 CMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKM 340