BLASTX nr result
ID: Coptis25_contig00024678
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024678 (342 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI14898.3| unnamed protein product [Vitis vinifera] 166 2e-39 emb|CAN69246.1| hypothetical protein VITISV_010442 [Vitis vinifera] 166 2e-39 ref|XP_002511274.1| replication factor C / DNA polymerase III ga... 165 3e-39 ref|XP_002318098.1| predicted protein [Populus trichocarpa] gi|2... 163 2e-38 ref|XP_002523330.1| replication factor C / DNA polymerase III ga... 158 5e-37 >emb|CBI14898.3| unnamed protein product [Vitis vinifera] Length = 875 Score = 166 bits (419), Expect = 2e-39 Identities = 79/114 (69%), Positives = 97/114 (85%) Frame = +1 Query: 1 GEIWSTLFNSLDDLPRHVVFVMVTADLDSLPRAAISQCQMYHFTKIKDVDIVNKLANICV 180 GE W+T+ NSLDDLP+HVVF+M+T LD LPR+A+S+ Q YHF KIKD DI +KL ICV Sbjct: 282 GETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICV 341 Query: 181 EEGVDFDNAALNFIAAKSNGSLRNAEITLDQLSLLGKRITISLAHELIGIVSDE 342 EE ++FD AL+FIAAKSNGSLR+AE+ LDQLSLLGKRIT+S+ +ELIGIVSD+ Sbjct: 342 EECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDD 395 >emb|CAN69246.1| hypothetical protein VITISV_010442 [Vitis vinifera] Length = 1057 Score = 166 bits (419), Expect = 2e-39 Identities = 79/114 (69%), Positives = 97/114 (85%) Frame = +1 Query: 1 GEIWSTLFNSLDDLPRHVVFVMVTADLDSLPRAAISQCQMYHFTKIKDVDIVNKLANICV 180 GE W+T+ NSLDDLP+HVVF+M+T LD LPR+A+S+ Q YHF KIKD DI +KL ICV Sbjct: 464 GETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICV 523 Query: 181 EEGVDFDNAALNFIAAKSNGSLRNAEITLDQLSLLGKRITISLAHELIGIVSDE 342 EE ++FD AL+FIAAKSNGSLR+AE+ LDQLSLLGKRIT+S+ +ELIGIVSD+ Sbjct: 524 EECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDD 577 >ref|XP_002511274.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223550389|gb|EEF51876.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 1025 Score = 165 bits (418), Expect = 3e-39 Identities = 78/114 (68%), Positives = 97/114 (85%) Frame = +1 Query: 1 GEIWSTLFNSLDDLPRHVVFVMVTADLDSLPRAAISQCQMYHFTKIKDVDIVNKLANICV 180 GE W+T+ NSL++LP+HVVFVMVT LD LPR+A++ Q YHF KIKD DI +L NIC+ Sbjct: 422 GETWATILNSLENLPQHVVFVMVTPHLDKLPRSAVTHSQKYHFPKIKDADIAVRLKNICI 481 Query: 181 EEGVDFDNAALNFIAAKSNGSLRNAEITLDQLSLLGKRITISLAHELIGIVSDE 342 EEG+DFD AL+FIAAKSNGSLR+AE+ LDQ+SLLGKRIT+SLA+EL G+VSD+ Sbjct: 482 EEGIDFDQVALDFIAAKSNGSLRDAEMMLDQMSLLGKRITMSLAYELAGVVSDD 535 >ref|XP_002318098.1| predicted protein [Populus trichocarpa] gi|222858771|gb|EEE96318.1| predicted protein [Populus trichocarpa] Length = 965 Score = 163 bits (412), Expect = 2e-38 Identities = 79/114 (69%), Positives = 97/114 (85%) Frame = +1 Query: 1 GEIWSTLFNSLDDLPRHVVFVMVTADLDSLPRAAISQCQMYHFTKIKDVDIVNKLANICV 180 GE W T+ NSL++L ++VVFVM+T +LD LPR+A+S+ Q YHF KIKD DI +L NICV Sbjct: 420 GETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDADIAGRLRNICV 479 Query: 181 EEGVDFDNAALNFIAAKSNGSLRNAEITLDQLSLLGKRITISLAHELIGIVSDE 342 EE +DFD AL+FIAAKS+GSLR+AEI LDQLSLLGKRIT+SLAHELIG+VSD+ Sbjct: 480 EEDLDFDQVALDFIAAKSSGSLRDAEIMLDQLSLLGKRITMSLAHELIGVVSDD 533 >ref|XP_002523330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223537418|gb|EEF39046.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 187 Score = 158 bits (399), Expect = 5e-37 Identities = 75/114 (65%), Positives = 94/114 (82%) Frame = +1 Query: 1 GEIWSTLFNSLDDLPRHVVFVMVTADLDSLPRAAISQCQMYHFTKIKDVDIVNKLANICV 180 GE W+T+ NSL++L +HVVFV VT LD LPR+ ++ Q YHF KIKD DI KL NIC+ Sbjct: 38 GETWATILNSLENLSQHVVFVTVTPHLDKLPRSVVTHSQKYHFPKIKDADIAVKLKNICI 97 Query: 181 EEGVDFDNAALNFIAAKSNGSLRNAEITLDQLSLLGKRITISLAHELIGIVSDE 342 EEG+DFD AL+FIAAKSNGSLR+AE+ LDQ+SLLGKRIT+SLA+EL+ +VSD+ Sbjct: 98 EEGIDFDQVALDFIAAKSNGSLRDAEMMLDQMSLLGKRITMSLAYELVRVVSDD 151