BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024615
         (735 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containi...   338   7e-91
emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]   337   1e-90
ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containi...   315   6e-84
ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containi...   314   1e-83
ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containi...   312   4e-83

>ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
            chloroplastic [Vitis vinifera]
          Length = 704

 Score =  338 bits (867), Expect = 7e-91
 Identities = 164/223 (73%), Positives = 188/223 (84%), Gaps = 11/223 (4%)
 Frame = -1

Query: 735  REGLLDEAVALIREAPFRPTENMWAALLNACRVHKNLELGKFAAERLYGMEPEKLSNYVV 556
            REGLLDEA ALI++APF+PT NMWAALL ACRVHKN ELGKFAAE+LYGM PEKLSNYVV
Sbjct: 482  REGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVV 541

Query: 555  LMNIYNSTGRLEEAAVVVQT-----------CSWIDVKKQAHCFHSGDKSHAQTDEIYQK 409
            L+NIYN +GRLEEAA V+QT           CSWI++KKQ + F SGDK HAQ+ EIYQK
Sbjct: 542  LLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQK 601

Query: 408  LDKMMLEIAKHGYLPTNKSLLPDVDKQEEWISFYHSEKLAIAFGLISTSASTSLQIVQSH 229
            LD++MLEI+KHGY+P +K LLPDVD+QEE +  YHSEKLAIAFGLI+TS  T LQIVQSH
Sbjct: 602  LDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSH 661

Query: 228  RICSDCHNVIKFIAMISRREIVVRDASRFHHFKDGNCSCGGYW 100
            RIC DCH+ IK IA+++RREIVVRDASRFHHFKDG+CSCG YW
Sbjct: 662  RICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  337 bits (865), Expect = 1e-90
 Identities = 164/223 (73%), Positives = 187/223 (83%), Gaps = 11/223 (4%)
 Frame = -1

Query: 735  REGLLDEAVALIREAPFRPTENMWAALLNACRVHKNLELGKFAAERLYGMEPEKLSNYVV 556
            REGLLDEA ALI++APF+PT NMWAALL ACRVHKN ELGKFAAE+LYGM PEKLSNYVV
Sbjct: 482  REGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVV 541

Query: 555  LMNIYNSTGRLEEAAVVVQT-----------CSWIDVKKQAHCFHSGDKSHAQTDEIYQK 409
            L+NIYN +GRLEEAA V+QT           CSWI++KKQ + F SGDK HAQ+ EIYQK
Sbjct: 542  LLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQK 601

Query: 408  LDKMMLEIAKHGYLPTNKSLLPDVDKQEEWISFYHSEKLAIAFGLISTSASTSLQIVQSH 229
            LD++MLEI+KHGY+P  K LLPDVD+QEE +  YHSEKLAIAFGLI+TS  T LQIVQSH
Sbjct: 602  LDELMLEISKHGYVPQXKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSH 661

Query: 228  RICSDCHNVIKFIAMISRREIVVRDASRFHHFKDGNCSCGGYW 100
            RIC DCH+ IK IA+++RREIVVRDASRFHHFKDG+CSCG YW
Sbjct: 662  RICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
            chloroplastic-like [Glycine max]
          Length = 690

 Score =  315 bits (807), Expect = 6e-84
 Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 11/223 (4%)
 Frame = -1

Query: 735  REGLLDEAVALIREAPFRPTENMWAALLNACRVHKNLELGKFAAERLYGMEPEKLSNYVV 556
            REGLLDEA  LIR APF+PT NMWA LL ACR+H+NLELGK AAE LYGMEPEKL NY+V
Sbjct: 468  REGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIV 527

Query: 555  LMNIYNSTGRLEEAAVVVQT-----------CSWIDVKKQAHCFHSGDKSHAQTDEIYQK 409
            L+N+YNS+G+L+EAA V+QT           C+WI+VKKQ++ F  GDKSH+QT EIY+K
Sbjct: 528  LLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEK 587

Query: 408  LDKMMLEIAKHGYLPTNKSLLPDVDKQEEWISFYHSEKLAIAFGLISTSASTSLQIVQSH 229
            ++ MM+EI++HGY+  NK+LLPDVD++E+ I  YHSEKLAIAFGLI+T   T LQI Q H
Sbjct: 588  VNNMMVEISRHGYVEENKALLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGH 647

Query: 228  RICSDCHNVIKFIAMISRREIVVRDASRFHHFKDGNCSCGGYW 100
            R+C DCH+ IKFIAM++ REIVVRDASRFHHF+DG+CSCG YW
Sbjct: 648  RVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690


>ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
            chloroplastic-like [Glycine max]
          Length = 691

 Score =  314 bits (804), Expect = 1e-83
 Identities = 149/223 (66%), Positives = 180/223 (80%), Gaps = 11/223 (4%)
 Frame = -1

Query: 735  REGLLDEAVALIREAPFRPTENMWAALLNACRVHKNLELGKFAAERLYGMEPEKLSNYVV 556
            RE LLDEA ALIR APF+PT NMWAALL ACR+HKNLELGK AAE+LYGMEPEKL NY+V
Sbjct: 469  RESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIV 528

Query: 555  LMNIYNSTGRLEEAAVVVQT-----------CSWIDVKKQAHCFHSGDKSHAQTDEIYQK 409
            L+N+YNS+G+L+EAA ++QT           CSW++VKKQ + F  GDKSH+QT EIYQK
Sbjct: 529  LLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQK 588

Query: 408  LDKMMLEIAKHGYLPTNKSLLPDVDKQEEWISFYHSEKLAIAFGLISTSASTSLQIVQSH 229
            +D +M+EI KHGY   N++LLPDVD++E+ I  YHSEKLAIAFGLI+T   T LQI Q H
Sbjct: 589  VDNLMVEICKHGYAEENETLLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGH 648

Query: 228  RICSDCHNVIKFIAMISRREIVVRDASRFHHFKDGNCSCGGYW 100
            R+C DCH+ IK IAM++ REIVVRDASRFHHF++G+CSCG YW
Sbjct: 649  RVCGDCHSAIKLIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691


>ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
            chloroplastic-like [Cucumis sativus]
            gi|449517215|ref|XP_004165641.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g50390,
            chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  312 bits (800), Expect = 4e-83
 Identities = 152/224 (67%), Positives = 182/224 (81%), Gaps = 12/224 (5%)
 Frame = -1

Query: 735  REGLLDEAVALIREAPFRPTENMWAALLNACRVHKNLELGKFAAERLYGMEPEKLSNYVV 556
            REGLLDEA ALIR+APF+PT NMWAALL ACRVH NLELGKFAAE+LYGMEPEKLSNY+V
Sbjct: 483  REGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIV 542

Query: 555  LMNIYNSTGRLEEAAVVVQT-----------CSWIDVKKQAHCFHSGDKSHAQTDEIYQK 409
            L+NIYNS+G+L+EAA V QT           CSWI+V  Q H F SGDK H Q +++  K
Sbjct: 543  LLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGK 602

Query: 408  LDKMMLEIAKHGYLPTNKS-LLPDVDKQEEWISFYHSEKLAIAFGLISTSASTSLQIVQS 232
            +D++ML I+K GY+P  ++ +LPDVD+ EE I  YHSEKLAIA+GL++T   T LQIVQS
Sbjct: 603  VDELMLNISKLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQS 662

Query: 231  HRICSDCHNVIKFIAMISRREIVVRDASRFHHFKDGNCSCGGYW 100
            HRICSDCH+VIK IAMI++REIV+RDASRFHHF+DG+CSCG YW
Sbjct: 663  HRICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706