BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024549
         (1089 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    80   1e-12
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    79   3e-12
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    71   5e-10
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    71   5e-10
ref|XP_002337484.1| predicted protein [Populus trichocarpa] gi|2...    69   2e-09

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 47/136 (34%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
 Frame = +3

Query: 432 VWIPPEPNIMKLNIDGAVFGSPGPSGIGICCRDSEGEFIFTFCKRLTNGTIDRAEAYAVV 611
           +W+PP    MK+N DG+V GSP    IG+  R S+  F   F + +   T   AE  A +
Sbjct: 244 IWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACM 303

Query: 612 EGIEIAISRGFYHLWVEXXXXXXXXXXXXG-AIPWELQSRWKRCKQKITSIR--FTHIWR 782
             IE A      ++W+E               +PW++  RW  C     SIR   TH+ R
Sbjct: 304 FAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCTHVNR 363

Query: 783 EANISADTLAKAGAAL 830
           E N+ AD LAK G  L
Sbjct: 364 EGNLVADALAKNGQGL 379


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
 Frame = +3

Query: 240  LRNKVYFESKVPNLMNCKQFVRAQIVCTHHRSKACNGNNNWETLVLTNWAVTPRPKQAPQ 419
            LRN   F+S++ ++ + K  + + I  + + S     ++  ++ +L  ++V+PR ++   
Sbjct: 952  LRNAFRFQSQLQSIQSAKARIHSLIAMSGNVSTGKCLHS--DSAILEEFSVSPRHRKYKD 1009

Query: 420  LKTCVWIPPEPNIMKLNIDGAVFGSPGPSGIGICCRDSEGEFIFTFCKRLTNGTIDRAEA 599
            +   +W  P P ++K+N DG+V G  G +  G   RDS G F+  F   +   ++  AE 
Sbjct: 1010 IILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAET 1067

Query: 600  YAVVEGIEIAISRGFYHLWVEXXXXXXXXXXXXGA-IPWELQSRWKRCKQKITSIRFTHI 776
             A +  +E A   G+ +LW+E             + + W L++RW   ++    +  +HI
Sbjct: 1068 LAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHI 1127

Query: 777  WREANISADTLAKAG 821
              E N  AD LA  G
Sbjct: 1128 LHEGNRCADNLANMG 1142


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
 Frame = +3

Query: 432 VWIPPEPNIMKLNIDGAVFGSPGPSGIGICCRDSEGEFIFTFCKRLTNGTIDRAEAYAVV 611
           +W PP  +I+K+N DG+  G      IGI  RDS   F+      + N T   AE  A +
Sbjct: 215 IWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGM 274

Query: 612 EGIEIAISRGFYHLWVEXXXXXXXXXXXXG-AIPWELQSRWKRCKQKITSIRFT--HIWR 782
             +E A      H+ +E            G  +PW++++RW+ C     SI  +  HI R
Sbjct: 275 MAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILR 334

Query: 783 EANISADTLAKAGAAL 830
           E N+ AD LAK G  L
Sbjct: 335 EGNMVADALAKHGQGL 350


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
 Frame = +3

Query: 432 VWIPPEPNIMKLNIDGAVFGSPGPSGIGICCRDSEGEFIFTFCKRLTNGTIDRAEAYAVV 611
           +W PP  +I+K+N DG+  G      IGI  RDS   F+      + N T   AE  A +
Sbjct: 52  IWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGM 111

Query: 612 EGIEIAISRGFYHLWVEXXXXXXXXXXXXG-AIPWELQSRWKRCKQKITSIRFT--HIWR 782
             +E A      H+ +E            G  +PW++++RW+ C     SI  +  HI R
Sbjct: 112 MAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILR 171

Query: 783 EANISADTLAKAGAAL 830
           E N+ AD LAK G  L
Sbjct: 172 EGNMVADALAKHGQGL 187


>ref|XP_002337484.1| predicted protein [Populus trichocarpa] gi|222839453|gb|EEE77790.1|
           predicted protein [Populus trichocarpa]
          Length = 228

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
 Frame = +3

Query: 432 VWIPPEPNIMKLNIDGAVFGSPGPSGIGICCRDSEGEFIFTFCKRLTNGTIDRAEAYAVV 611
           +W PP  N +K N+DG+  G PGPSGIG   R+  G  +  F   +     + AE  A+V
Sbjct: 81  MWSPPMINSLKWNVDGSSLGKPGPSGIGGVLRNHHGHLLGIFSVPVGILDSNIAELRAIV 140

Query: 612 EGIEIAISRGFY---HLWVE-XXXXXXXXXXXXGAIPWE---LQSRWKRCKQKITSIRFT 770
           + IE++ S   +   HL +E                PW+   L S   R K    SI F+
Sbjct: 141 KAIELSASNCLFHHQHLIIESDSVNAISWMNKPHNRPWKHHNLFSSVNRLKAYFGSITFS 200

Query: 771 HIWREANISADTLAKAG 821
           HI+RE+N  AD +AK G
Sbjct: 201 HIFRESNCMADCMAKQG 217