BLASTX nr result
ID: Coptis25_contig00024548
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024548 (675 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica... 59 7e-07 gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like p... 58 1e-06 >ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula] gi|355496705|gb|AES77908.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula] Length = 666 Score = 59.3 bits (142), Expect = 7e-07 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 8/163 (4%) Frame = -3 Query: 661 CCFCNCERENSKHLFLDCHFSSNVWARVKQALGLGSSVKSSNQEWCCIINHCRKQSPKAE 482 CCFC E+S+H+F +CH +S +W LG C+ R ++ Sbjct: 78 CCFCMKSAESSQHIFFECHVTSRLWD------WLGKGTDKLLDCSSCLQLLIRNWGSGSK 131 Query: 481 VYRAYGNA----TICYLWSERNSRRFQNHSVTWQSLANTILHDMKLYLS---IKIDSVLD 323 + N+ TI +W ERN R F N +L N IL ++K+ S IK +S + Sbjct: 132 LVNNILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQ 191 Query: 322 TVEIKALLTRLDIQVKHTNKTPFL-CKWKLPPSGFFKLNIDRS 197 ++ L +I K TP L WK P K+N D S Sbjct: 192 DYKVAKL---FNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGS 231 >gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like protein, related [Medicago truncatula] Length = 196 Score = 58.2 bits (139), Expect = 1e-06 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 4/103 (3%) Frame = -3 Query: 661 CCFCNCERENSKHLFLDCHFSSNVWARVKQALGLGSSVKSSNQEWCCII----NHCRKQS 494 C C E E HLF C ++ VW V + + + +V +SN W I+ +HC + Sbjct: 78 CVLCTKENETHSHLFFSCDYADAVWKGVMRWMNM--TVNTSN--WHSILQYIQSHCNSNN 133 Query: 493 PKAEVYRAYGNATICYLWSERNSRRFQNHSVTWQSLANTILHD 365 + +R + T+ +W ERN R+FQN + Q L N I D Sbjct: 134 GMHQAHRMVLSETLYVIWKERNDRKFQNCYRSVQQLLNQIKMD 176