BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024548
         (675 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    59   7e-07
gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like p...    58   1e-06

>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
 Frame = -3

Query: 661 CCFCNCERENSKHLFLDCHFSSNVWARVKQALGLGSSVKSSNQEWCCIINHCRKQSPKAE 482
           CCFC    E+S+H+F +CH +S +W        LG           C+    R     ++
Sbjct: 78  CCFCMKSAESSQHIFFECHVTSRLWD------WLGKGTDKLLDCSSCLQLLIRNWGSGSK 131

Query: 481 VYRAYGNA----TICYLWSERNSRRFQNHSVTWQSLANTILHDMKLYLS---IKIDSVLD 323
           +     N+    TI  +W ERN R F N      +L N IL ++K+  S   IK +S + 
Sbjct: 132 LVNNILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQ 191

Query: 322 TVEIKALLTRLDIQVKHTNKTPFL-CKWKLPPSGFFKLNIDRS 197
             ++  L    +I  K    TP L   WK P     K+N D S
Sbjct: 192 DYKVAKL---FNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGS 231


>gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like protein, related
           [Medicago truncatula]
          Length = 196

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
 Frame = -3

Query: 661 CCFCNCERENSKHLFLDCHFSSNVWARVKQALGLGSSVKSSNQEWCCII----NHCRKQS 494
           C  C  E E   HLF  C ++  VW  V + + +  +V +SN  W  I+    +HC   +
Sbjct: 78  CVLCTKENETHSHLFFSCDYADAVWKGVMRWMNM--TVNTSN--WHSILQYIQSHCNSNN 133

Query: 493 PKAEVYRAYGNATICYLWSERNSRRFQNHSVTWQSLANTILHD 365
              + +R   + T+  +W ERN R+FQN   + Q L N I  D
Sbjct: 134 GMHQAHRMVLSETLYVIWKERNDRKFQNCYRSVQQLLNQIKMD 176