BLASTX nr result

ID: Coptis25_contig00024541 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024541
         (1370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523406.1| RNA binding protein, putative [Ricinus commu...   381   e-109
ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|2...   373   e-106
emb|CBI16556.3| unnamed protein product [Vitis vinifera]              369   e-103
ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vi...   369   e-103
emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]   366   e-100

>ref|XP_002523406.1| RNA binding protein, putative [Ricinus communis]
            gi|223537356|gb|EEF38985.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 771

 Score =  381 bits (979), Expect(2) = e-109
 Identities = 183/254 (72%), Positives = 220/254 (86%)
 Frame = -1

Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
            LMTDPFGNYLVQKLLEVC +DQ+ QIL  ITR  G+LVRIS DMHGTRAVQKVIETL++P
Sbjct: 466  LMTDPFGNYLVQKLLEVCNEDQRMQILCAITRKAGELVRISCDMHGTRAVQKVIETLKTP 525

Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
            +QFS+VVSSLKPGIV L+K+ NGNHVAQRCLQ+L PE+ E+LFE A  +C +LA DRH C
Sbjct: 526  QQFSMVVSSLKPGIVTLIKNMNGNHVAQRCLQYLTPEHSEFLFEAATTNCVELATDRHGC 585

Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
            CVLQKCL+H +GE RR L+S ITS+AL LSQ+ +GNYVVQFVFEL+LPW T  +LD+LEG
Sbjct: 586  CVLQKCLSHSEGEQRRCLISEITSNALILSQDPFGNYVVQFVFELRLPWATANILDQLEG 645

Query: 830  SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
            +YG LSMQKYSSNV+EKCLK+A E+ R  I+++L+S++ LDQ++QDPYGNYVIQAAL+ S
Sbjct: 646  NYGDLSMQKYSSNVIEKCLKYASEEHRAHIIRQLISNTHLDQVMQDPYGNYVIQAALHQS 705

Query: 650  KGAAHAALLEAIRP 609
            KGA HAAL+EAIRP
Sbjct: 706  KGALHAALVEAIRP 719



 Score = 42.0 bits (97), Expect(2) = e-109
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = -2

Query: 610 HVPALRTSPYGKKILSSNGLKT*LKL 533
           HVP LRTSPYGKK+LSSN LK  +K+
Sbjct: 720 HVPVLRTSPYGKKVLSSNFLKKYIKV 745


>ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|222844876|gb|EEE82423.1|
            predicted protein [Populus trichocarpa]
          Length = 620

 Score =  373 bits (958), Expect(2) = e-106
 Identities = 186/261 (71%), Positives = 219/261 (83%), Gaps = 7/261 (2%)
 Frame = -1

Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
            LMTDPFGNYLVQKLLEVC +DQ+ QIL  ITR  G+LVRIS DMHGTRAVQKVIETL++P
Sbjct: 338  LMTDPFGNYLVQKLLEVCNEDQRMQILRTITRKAGELVRISCDMHGTRAVQKVIETLKTP 397

Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
            EQFS+VVS+LKP IV L+K+ NGNHVAQRCLQ+L+PEY E+LFE   A+C +LA DRH C
Sbjct: 398  EQFSMVVSALKPCIVTLIKNMNGNHVAQRCLQYLMPEYSEFLFEATTANCVELATDRHGC 457

Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYG-------NYVVQFVFELQLPWVTIG 852
            CVLQKCL+   GE RR LVS ITS+AL LSQ+ +G       NYVVQFVFEL+LPW    
Sbjct: 458  CVLQKCLSQSKGEQRRCLVSEITSNALILSQDPFGYCIFLFSNYVVQFVFELRLPWAATD 517

Query: 851  VLDKLEGSYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVI 672
            +LD+LEG+YG LS+QKYSSNVVEKCLK+AGE RR RI++EL+++SRLDQ++QDP+GNYVI
Sbjct: 518  ILDQLEGNYGDLSVQKYSSNVVEKCLKYAGEVRRTRIIRELINNSRLDQVMQDPFGNYVI 577

Query: 671  QAALNNSKGAAHAALLEAIRP 609
            QAAL  SKGA HAAL+EAIRP
Sbjct: 578  QAALQQSKGALHAALVEAIRP 598



 Score = 38.9 bits (89), Expect(2) = e-106
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = -2

Query: 610 HVPALRTSPYGKKILSSNGLK 548
           HVP L+TSPYGKK+LSSN LK
Sbjct: 599 HVPTLQTSPYGKKVLSSNILK 619


>emb|CBI16556.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  369 bits (946), Expect(2) = e-103
 Identities = 181/253 (71%), Positives = 215/253 (84%)
 Frame = -1

Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
            LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR  GDLVRIS +MHGTRAVQKVIETLR+ 
Sbjct: 449  LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 508

Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
            EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH C
Sbjct: 509  EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGC 568

Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
            CVLQKCL H   E R R++  ITS+AL LSQ+ +GNYVVQ+VFE   PW  + +LD+LEG
Sbjct: 569  CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 626

Query: 830  SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
            +YG LS+QKYSSNVVEKCL+ AG++ R  I+QEL+++ R+DQI+QDPYGNYVIQAALNNS
Sbjct: 627  NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 686

Query: 650  KGAAHAALLEAIR 612
            KGA HAAL+E IR
Sbjct: 687  KGAIHAALIEVIR 699



 Score = 34.7 bits (78), Expect(2) = e-103
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LSDHVPALRTSPYGKKILSSNGLK 548
           +  HV  LRTSPYGKK+LS   LK
Sbjct: 698 IRSHVHVLRTSPYGKKVLSCTSLK 721


>ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vinifera]
          Length = 711

 Score =  369 bits (946), Expect(2) = e-103
 Identities = 181/253 (71%), Positives = 215/253 (84%)
 Frame = -1

Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
            LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR  GDLVRIS +MHGTRAVQKVIETLR+ 
Sbjct: 438  LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 497

Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
            EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH C
Sbjct: 498  EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGC 557

Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
            CVLQKCL H   E R R++  ITS+AL LSQ+ +GNYVVQ+VFE   PW  + +LD+LEG
Sbjct: 558  CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 615

Query: 830  SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
            +YG LS+QKYSSNVVEKCL+ AG++ R  I+QEL+++ R+DQI+QDPYGNYVIQAALNNS
Sbjct: 616  NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 675

Query: 650  KGAAHAALLEAIR 612
            KGA HAAL+E IR
Sbjct: 676  KGAIHAALIEVIR 688



 Score = 34.7 bits (78), Expect(2) = e-103
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LSDHVPALRTSPYGKKILSSNGLK 548
           +  HV  LRTSPYGKK+LS   LK
Sbjct: 687 IRSHVHVLRTSPYGKKVLSCTSLK 710


>emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]
          Length = 1051

 Score =  366 bits (939), Expect(2) = e-100
 Identities = 180/253 (71%), Positives = 214/253 (84%)
 Frame = -1

Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
            LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR  GDLVRIS +MHGTRAVQKVIETLR+ 
Sbjct: 479  LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 538

Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
            EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+L E AI +C +LA DRH C
Sbjct: 539  EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLXEAAITNCVELATDRHGC 598

Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
            CVLQKCL H   E R R++  ITS+AL LSQ+ +GNYVVQ+VFE   PW  + +LD+LEG
Sbjct: 599  CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 656

Query: 830  SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
            +YG LS+QKYSSNVVEKCL+ AG++ R  I+QEL+++ R+DQI+QDPYGNYVIQAALNNS
Sbjct: 657  NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 716

Query: 650  KGAAHAALLEAIR 612
            KGA HAAL+E IR
Sbjct: 717  KGAIHAALIEVIR 729



 Score = 28.5 bits (62), Expect(2) = e-100
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 619 LSDHVPALRTSPYGKKI 569
           +  HV  LRTSPYGKK+
Sbjct: 728 IRSHVHVLRTSPYGKKV 744


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