BLASTX nr result
ID: Coptis25_contig00024541
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00024541
(1370 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523406.1| RNA binding protein, putative [Ricinus commu... 381 e-109
ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|2... 373 e-106
emb|CBI16556.3| unnamed protein product [Vitis vinifera] 369 e-103
ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vi... 369 e-103
emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera] 366 e-100
>ref|XP_002523406.1| RNA binding protein, putative [Ricinus communis]
gi|223537356|gb|EEF38985.1| RNA binding protein, putative
[Ricinus communis]
Length = 771
Score = 381 bits (979), Expect(2) = e-109
Identities = 183/254 (72%), Positives = 220/254 (86%)
Frame = -1
Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
LMTDPFGNYLVQKLLEVC +DQ+ QIL ITR G+LVRIS DMHGTRAVQKVIETL++P
Sbjct: 466 LMTDPFGNYLVQKLLEVCNEDQRMQILCAITRKAGELVRISCDMHGTRAVQKVIETLKTP 525
Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
+QFS+VVSSLKPGIV L+K+ NGNHVAQRCLQ+L PE+ E+LFE A +C +LA DRH C
Sbjct: 526 QQFSMVVSSLKPGIVTLIKNMNGNHVAQRCLQYLTPEHSEFLFEAATTNCVELATDRHGC 585
Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
CVLQKCL+H +GE RR L+S ITS+AL LSQ+ +GNYVVQFVFEL+LPW T +LD+LEG
Sbjct: 586 CVLQKCLSHSEGEQRRCLISEITSNALILSQDPFGNYVVQFVFELRLPWATANILDQLEG 645
Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
+YG LSMQKYSSNV+EKCLK+A E+ R I+++L+S++ LDQ++QDPYGNYVIQAAL+ S
Sbjct: 646 NYGDLSMQKYSSNVIEKCLKYASEEHRAHIIRQLISNTHLDQVMQDPYGNYVIQAALHQS 705
Query: 650 KGAAHAALLEAIRP 609
KGA HAAL+EAIRP
Sbjct: 706 KGALHAALVEAIRP 719
Score = 42.0 bits (97), Expect(2) = e-109
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = -2
Query: 610 HVPALRTSPYGKKILSSNGLKT*LKL 533
HVP LRTSPYGKK+LSSN LK +K+
Sbjct: 720 HVPVLRTSPYGKKVLSSNFLKKYIKV 745
>ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|222844876|gb|EEE82423.1|
predicted protein [Populus trichocarpa]
Length = 620
Score = 373 bits (958), Expect(2) = e-106
Identities = 186/261 (71%), Positives = 219/261 (83%), Gaps = 7/261 (2%)
Frame = -1
Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
LMTDPFGNYLVQKLLEVC +DQ+ QIL ITR G+LVRIS DMHGTRAVQKVIETL++P
Sbjct: 338 LMTDPFGNYLVQKLLEVCNEDQRMQILRTITRKAGELVRISCDMHGTRAVQKVIETLKTP 397
Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
EQFS+VVS+LKP IV L+K+ NGNHVAQRCLQ+L+PEY E+LFE A+C +LA DRH C
Sbjct: 398 EQFSMVVSALKPCIVTLIKNMNGNHVAQRCLQYLMPEYSEFLFEATTANCVELATDRHGC 457
Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYG-------NYVVQFVFELQLPWVTIG 852
CVLQKCL+ GE RR LVS ITS+AL LSQ+ +G NYVVQFVFEL+LPW
Sbjct: 458 CVLQKCLSQSKGEQRRCLVSEITSNALILSQDPFGYCIFLFSNYVVQFVFELRLPWAATD 517
Query: 851 VLDKLEGSYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVI 672
+LD+LEG+YG LS+QKYSSNVVEKCLK+AGE RR RI++EL+++SRLDQ++QDP+GNYVI
Sbjct: 518 ILDQLEGNYGDLSVQKYSSNVVEKCLKYAGEVRRTRIIRELINNSRLDQVMQDPFGNYVI 577
Query: 671 QAALNNSKGAAHAALLEAIRP 609
QAAL SKGA HAAL+EAIRP
Sbjct: 578 QAALQQSKGALHAALVEAIRP 598
Score = 38.9 bits (89), Expect(2) = e-106
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -2
Query: 610 HVPALRTSPYGKKILSSNGLK 548
HVP L+TSPYGKK+LSSN LK
Sbjct: 599 HVPTLQTSPYGKKVLSSNILK 619
>emb|CBI16556.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 369 bits (946), Expect(2) = e-103
Identities = 181/253 (71%), Positives = 215/253 (84%)
Frame = -1
Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR GDLVRIS +MHGTRAVQKVIETLR+
Sbjct: 449 LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 508
Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH C
Sbjct: 509 EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGC 568
Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
CVLQKCL H E R R++ ITS+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG
Sbjct: 569 CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 626
Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
+YG LS+QKYSSNVVEKCL+ AG++ R I+QEL+++ R+DQI+QDPYGNYVIQAALNNS
Sbjct: 627 NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 686
Query: 650 KGAAHAALLEAIR 612
KGA HAAL+E IR
Sbjct: 687 KGAIHAALIEVIR 699
Score = 34.7 bits (78), Expect(2) = e-103
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2
Query: 619 LSDHVPALRTSPYGKKILSSNGLK 548
+ HV LRTSPYGKK+LS LK
Sbjct: 698 IRSHVHVLRTSPYGKKVLSCTSLK 721
>ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vinifera]
Length = 711
Score = 369 bits (946), Expect(2) = e-103
Identities = 181/253 (71%), Positives = 215/253 (84%)
Frame = -1
Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR GDLVRIS +MHGTRAVQKVIETLR+
Sbjct: 438 LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 497
Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH C
Sbjct: 498 EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGC 557
Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
CVLQKCL H E R R++ ITS+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG
Sbjct: 558 CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 615
Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
+YG LS+QKYSSNVVEKCL+ AG++ R I+QEL+++ R+DQI+QDPYGNYVIQAALNNS
Sbjct: 616 NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 675
Query: 650 KGAAHAALLEAIR 612
KGA HAAL+E IR
Sbjct: 676 KGAIHAALIEVIR 688
Score = 34.7 bits (78), Expect(2) = e-103
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2
Query: 619 LSDHVPALRTSPYGKKILSSNGLK 548
+ HV LRTSPYGKK+LS LK
Sbjct: 687 IRSHVHVLRTSPYGKKVLSCTSLK 710
>emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]
Length = 1051
Score = 366 bits (939), Expect(2) = e-100
Identities = 180/253 (71%), Positives = 214/253 (84%)
Frame = -1
Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191
LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR GDLVRIS +MHGTRAVQKVIETLR+
Sbjct: 479 LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 538
Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011
EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+L E AI +C +LA DRH C
Sbjct: 539 EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLXEAAITNCVELATDRHGC 598
Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831
CVLQKCL H E R R++ ITS+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG
Sbjct: 599 CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 656
Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651
+YG LS+QKYSSNVVEKCL+ AG++ R I+QEL+++ R+DQI+QDPYGNYVIQAALNNS
Sbjct: 657 NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 716
Query: 650 KGAAHAALLEAIR 612
KGA HAAL+E IR
Sbjct: 717 KGAIHAALIEVIR 729
Score = 28.5 bits (62), Expect(2) = e-100
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 619 LSDHVPALRTSPYGKKI 569
+ HV LRTSPYGKK+
Sbjct: 728 IRSHVHVLRTSPYGKKV 744