BLASTX nr result
ID: Coptis25_contig00024541
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024541 (1370 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002523406.1| RNA binding protein, putative [Ricinus commu... 381 e-109 ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|2... 373 e-106 emb|CBI16556.3| unnamed protein product [Vitis vinifera] 369 e-103 ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vi... 369 e-103 emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera] 366 e-100 >ref|XP_002523406.1| RNA binding protein, putative [Ricinus communis] gi|223537356|gb|EEF38985.1| RNA binding protein, putative [Ricinus communis] Length = 771 Score = 381 bits (979), Expect(2) = e-109 Identities = 183/254 (72%), Positives = 220/254 (86%) Frame = -1 Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191 LMTDPFGNYLVQKLLEVC +DQ+ QIL ITR G+LVRIS DMHGTRAVQKVIETL++P Sbjct: 466 LMTDPFGNYLVQKLLEVCNEDQRMQILCAITRKAGELVRISCDMHGTRAVQKVIETLKTP 525 Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011 +QFS+VVSSLKPGIV L+K+ NGNHVAQRCLQ+L PE+ E+LFE A +C +LA DRH C Sbjct: 526 QQFSMVVSSLKPGIVTLIKNMNGNHVAQRCLQYLTPEHSEFLFEAATTNCVELATDRHGC 585 Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831 CVLQKCL+H +GE RR L+S ITS+AL LSQ+ +GNYVVQFVFEL+LPW T +LD+LEG Sbjct: 586 CVLQKCLSHSEGEQRRCLISEITSNALILSQDPFGNYVVQFVFELRLPWATANILDQLEG 645 Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651 +YG LSMQKYSSNV+EKCLK+A E+ R I+++L+S++ LDQ++QDPYGNYVIQAAL+ S Sbjct: 646 NYGDLSMQKYSSNVIEKCLKYASEEHRAHIIRQLISNTHLDQVMQDPYGNYVIQAALHQS 705 Query: 650 KGAAHAALLEAIRP 609 KGA HAAL+EAIRP Sbjct: 706 KGALHAALVEAIRP 719 Score = 42.0 bits (97), Expect(2) = e-109 Identities = 19/26 (73%), Positives = 22/26 (84%) Frame = -2 Query: 610 HVPALRTSPYGKKILSSNGLKT*LKL 533 HVP LRTSPYGKK+LSSN LK +K+ Sbjct: 720 HVPVLRTSPYGKKVLSSNFLKKYIKV 745 >ref|XP_002297618.1| predicted protein [Populus trichocarpa] gi|222844876|gb|EEE82423.1| predicted protein [Populus trichocarpa] Length = 620 Score = 373 bits (958), Expect(2) = e-106 Identities = 186/261 (71%), Positives = 219/261 (83%), Gaps = 7/261 (2%) Frame = -1 Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191 LMTDPFGNYLVQKLLEVC +DQ+ QIL ITR G+LVRIS DMHGTRAVQKVIETL++P Sbjct: 338 LMTDPFGNYLVQKLLEVCNEDQRMQILRTITRKAGELVRISCDMHGTRAVQKVIETLKTP 397 Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011 EQFS+VVS+LKP IV L+K+ NGNHVAQRCLQ+L+PEY E+LFE A+C +LA DRH C Sbjct: 398 EQFSMVVSALKPCIVTLIKNMNGNHVAQRCLQYLMPEYSEFLFEATTANCVELATDRHGC 457 Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYG-------NYVVQFVFELQLPWVTIG 852 CVLQKCL+ GE RR LVS ITS+AL LSQ+ +G NYVVQFVFEL+LPW Sbjct: 458 CVLQKCLSQSKGEQRRCLVSEITSNALILSQDPFGYCIFLFSNYVVQFVFELRLPWAATD 517 Query: 851 VLDKLEGSYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVI 672 +LD+LEG+YG LS+QKYSSNVVEKCLK+AGE RR RI++EL+++SRLDQ++QDP+GNYVI Sbjct: 518 ILDQLEGNYGDLSVQKYSSNVVEKCLKYAGEVRRTRIIRELINNSRLDQVMQDPFGNYVI 577 Query: 671 QAALNNSKGAAHAALLEAIRP 609 QAAL SKGA HAAL+EAIRP Sbjct: 578 QAALQQSKGALHAALVEAIRP 598 Score = 38.9 bits (89), Expect(2) = e-106 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -2 Query: 610 HVPALRTSPYGKKILSSNGLK 548 HVP L+TSPYGKK+LSSN LK Sbjct: 599 HVPTLQTSPYGKKVLSSNILK 619 >emb|CBI16556.3| unnamed protein product [Vitis vinifera] Length = 722 Score = 369 bits (946), Expect(2) = e-103 Identities = 181/253 (71%), Positives = 215/253 (84%) Frame = -1 Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191 LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR GDLVRIS +MHGTRAVQKVIETLR+ Sbjct: 449 LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 508 Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011 EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH C Sbjct: 509 EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGC 568 Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831 CVLQKCL H E R R++ ITS+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG Sbjct: 569 CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 626 Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651 +YG LS+QKYSSNVVEKCL+ AG++ R I+QEL+++ R+DQI+QDPYGNYVIQAALNNS Sbjct: 627 NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 686 Query: 650 KGAAHAALLEAIR 612 KGA HAAL+E IR Sbjct: 687 KGAIHAALIEVIR 699 Score = 34.7 bits (78), Expect(2) = e-103 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = -2 Query: 619 LSDHVPALRTSPYGKKILSSNGLK 548 + HV LRTSPYGKK+LS LK Sbjct: 698 IRSHVHVLRTSPYGKKVLSCTSLK 721 >ref|XP_002283747.1| PREDICTED: pumilio homolog 12-like [Vitis vinifera] Length = 711 Score = 369 bits (946), Expect(2) = e-103 Identities = 181/253 (71%), Positives = 215/253 (84%) Frame = -1 Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191 LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR GDLVRIS +MHGTRAVQKVIETLR+ Sbjct: 438 LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 497 Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011 EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+LFE AI +C +LA DRH C Sbjct: 498 EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLFEAAITNCVELATDRHGC 557 Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831 CVLQKCL H E R R++ ITS+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG Sbjct: 558 CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 615 Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651 +YG LS+QKYSSNVVEKCL+ AG++ R I+QEL+++ R+DQI+QDPYGNYVIQAALNNS Sbjct: 616 NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 675 Query: 650 KGAAHAALLEAIR 612 KGA HAAL+E IR Sbjct: 676 KGAIHAALIEVIR 688 Score = 34.7 bits (78), Expect(2) = e-103 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = -2 Query: 619 LSDHVPALRTSPYGKKILSSNGLK 548 + HV LRTSPYGKK+LS LK Sbjct: 687 IRSHVHVLRTSPYGKKVLSCTSLK 710 >emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera] Length = 1051 Score = 366 bits (939), Expect(2) = e-100 Identities = 180/253 (71%), Positives = 214/253 (84%) Frame = -1 Query: 1370 LMTDPFGNYLVQKLLEVCTKDQKNQILHVITRNPGDLVRISLDMHGTRAVQKVIETLRSP 1191 LMTDPFGNYLVQKLLEVCT+DQ+ QILH ITR GDLVRIS +MHGTRAVQKVIETLR+ Sbjct: 479 LMTDPFGNYLVQKLLEVCTEDQQMQILHAITRRAGDLVRISCNMHGTRAVQKVIETLRTS 538 Query: 1190 EQFSLVVSSLKPGIVNLMKDTNGNHVAQRCLQHLLPEYKEYLFEDAIAHCSKLAKDRHAC 1011 EQFS++VSSLKPGIV L+KD NGNHVAQ CLQ+L+PEY+E+L E AI +C +LA DRH C Sbjct: 539 EQFSMIVSSLKPGIVTLIKDMNGNHVAQCCLQNLMPEYREFLXEAAITNCVELATDRHGC 598 Query: 1010 CVLQKCLTHCDGEHRRRLVSGITSDALSLSQNQYGNYVVQFVFELQLPWVTIGVLDKLEG 831 CVLQKCL H E R R++ ITS+AL LSQ+ +GNYVVQ+VFE PW + +LD+LEG Sbjct: 599 CVLQKCLGHSAVEQRDRIIYEITSNALILSQDPFGNYVVQYVFE--FPWAIVDILDQLEG 656 Query: 830 SYGYLSMQKYSSNVVEKCLKFAGEDRRPRIVQELVSDSRLDQILQDPYGNYVIQAALNNS 651 +YG LS+QKYSSNVVEKCL+ AG++ R I+QEL+++ R+DQI+QDPYGNYVIQAALNNS Sbjct: 657 NYGDLSLQKYSSNVVEKCLQHAGDEHRHCIIQELINNPRIDQIMQDPYGNYVIQAALNNS 716 Query: 650 KGAAHAALLEAIR 612 KGA HAAL+E IR Sbjct: 717 KGAIHAALIEVIR 729 Score = 28.5 bits (62), Expect(2) = e-100 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 619 LSDHVPALRTSPYGKKI 569 + HV LRTSPYGKK+ Sbjct: 728 IRSHVHVLRTSPYGKKV 744