BLASTX nr result
ID: Coptis25_contig00024536
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00024536
(1437 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-... 746 0.0
ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arab... 716 0.0
ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana] gi... 715 0.0
ref|XP_004157962.1| PREDICTED: replication protein A 70 kDa DNA-... 714 0.0
ref|XP_004141065.1| PREDICTED: replication protein A 70 kDa DNA-... 714 0.0
>ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis
vinifera] gi|297738589|emb|CBI27834.3| unnamed protein
product [Vitis vinifera]
Length = 622
Score = 746 bits (1925), Expect = 0.0
Identities = 373/501 (74%), Positives = 423/501 (84%), Gaps = 30/501 (5%)
Frame = -3
Query: 1417 MPINLTANAITEITKGNLNLKPLVQVIDIKLIGKNNSQDRYRLLLSDSVSTQSAMLATQL 1238
MP+NLT NAI I G++N KPLVQV+DIKLIG NSQ+RYR LLSD+V+TQ AMLATQL
Sbjct: 1 MPVNLTPNAIAAINGGDVNSKPLVQVLDIKLIG--NSQERYRFLLSDAVATQQAMLATQL 58
Query: 1237 NHRVKTGVVRKGSVIQLIDYICSNVQNRQIIVILNMETIIPDCEMIGNPK---------- 1088
N RVK+G VRKGSVIQLIDYICS VQNR+IIV+LNMETIIP+CE+IGNPK
Sbjct: 59 NDRVKSGQVRKGSVIQLIDYICSVVQNRKIIVVLNMETIIPECEIIGNPKMNTESHSTAQ 118
Query: 1087 --------------------IESGNCTMPPPRMQSVQPHYQPTPPPNYRSHGAIVKNEAP 968
+++G MP R SVQP +Q PPPNY+SHG I+KNEAP
Sbjct: 119 KEFPGGNRARSVGVTNNNLSVQNGGNKMPSFR-PSVQPPFQ--PPPNYKSHGTILKNEAP 175
Query: 967 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNS 788
ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN+
Sbjct: 176 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 235
Query: 787 LVDKFYDVVEVGKVYMVSKGSLKPAQKNFNHLKNEWEILLETASTVDLCPDEDSSIPQQQ 608
+VD+FYD +EVGKVY++SKGSLKPAQKNFNHLKNEWEI LE +S+V+LCPDED SIP+QQ
Sbjct: 236 VVDRFYDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQ 295
Query: 607 FSFRPISDIENTENNSILDIIGVVTSVNPSVSIMRKNGMETQRRVLNLKDQSGRSVELTL 428
FSFRPIS+IEN ENNSILD+IG+V SVNPSV I+RKNGMETQRR++NLKD SGRS+ELT+
Sbjct: 296 FSFRPISEIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTM 355
Query: 427 WGEFCNREGRELQEMVDSGLSPVLAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLR 248
WGEFCNREG +LQEM+DSG PVLAVK+GKV+DFSGKSVGTIS++QLFINPDF EA +LR
Sbjct: 356 WGEFCNREGHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLR 415
Query: 247 DWFDRGGKDVAFLSISRDFAPGAQRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKT 68
+WFDRGGK+ A SISRD P RNEIRKTVSQIK EGLGR+DKPDWVTVKA++SF+KT
Sbjct: 416 EWFDRGGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKT 475
Query: 67 DNFCYTACPLMIGDRQCSKKV 5
D FCY ACPLMIGDRQC+KKV
Sbjct: 476 DTFCYAACPLMIGDRQCNKKV 496
>ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata] gi|297329578|gb|EFH59997.1| hypothetical protein
ARALYDRAFT_899421 [Arabidopsis lyrata subsp. lyrata]
Length = 640
Score = 716 bits (1849), Expect = 0.0
Identities = 358/518 (69%), Positives = 419/518 (80%), Gaps = 47/518 (9%)
Frame = -3
Query: 1417 MPINLTANAITEITKGNLNLKPLVQVIDIKLIGKNN--SQDRYRLLLSDSVSTQSAMLAT 1244
MP++LT NAIT I G++NLKPL+QV++IK+IG++ SQ+RYR L+SD VS Q AM+A
Sbjct: 1 MPVSLTPNAITAINDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60
Query: 1243 QLNHRVKTGVVRKGSVIQLIDYICSNVQNRQIIVILNMETIIPDCEMIGNPKIES----- 1079
QLN RVK+G V KGS++QLIDYICS+V+ R++IV+LNMETI+P E IGNP I
Sbjct: 61 QLNDRVKSGQVEKGSIVQLIDYICSDVKGRKLIVVLNMETIVPHSETIGNPTIFGETDTE 120
Query: 1078 --------GNCTMP-----------------PPR--------------MQSVQPHYQPTP 1016
GN P PPR SVQP YQP
Sbjct: 121 AQKPLSAVGNIPPPNRVVFNEPTAQHSVNRAPPRGVNIQNPANSTPSFRPSVQPSYQP-- 178
Query: 1015 PPNYRSHGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 836
P +YR+HG I+KNEAPAR+IPIAALNPYQGRWAIKARVTAKGD+RRYNNA+GDGKV+SFD
Sbjct: 179 PASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVYSFD 238
Query: 835 LLDSDGGEIRVTCFNSLVDKFYDVVEVGKVYMVSKGSLKPAQKNFNHLKNEWEILLETAS 656
LLDSDGGEIRVTCFN++ D+FYDV EVGKVY++SKGSLKPAQKN+NHLKNEWEI LE+ S
Sbjct: 239 LLDSDGGEIRVTCFNAVADRFYDVTEVGKVYLISKGSLKPAQKNYNHLKNEWEIFLESTS 298
Query: 655 TVDLCPDEDSSIPQQQFSFRPISDIENTENNSILDIIGVVTSVNPSVSIMRKNGMETQRR 476
TV+LCPDED SIP+QQFSFRPISDIEN ENN+ILD+IGVVTSVNPSV I+RKNGMET RR
Sbjct: 299 TVELCPDEDGSIPRQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRR 358
Query: 475 VLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGLSPVLAVKAGKVSDFSGKSVGTISS 296
+LNLKD+SG++VE+TLWGEFCNR+GR+L+EMVDS PVLA+KAGKVSDFSGKSVGTISS
Sbjct: 359 ILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISS 418
Query: 295 SQLFINPDFPEAYSLRDWFDRGGKDVAFLSISRDFAP-GAQRNEIRKTVSQIKAEGLGRA 119
+QLFINPDFPEA+ LR WFD GGKD A SISRD P G RNEIRK+VSQIK EGLGR+
Sbjct: 419 TQLFINPDFPEAHKLRTWFDHGGKDTASFSISRDTMPGGVSRNEIRKSVSQIKEEGLGRS 478
Query: 118 DKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKV 5
DKPDW+TVKA++SF+KTD+FCYTACPLMIGD+QC+KKV
Sbjct: 479 DKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKV 516
>ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana]
gi|4584356|gb|AAD25150.1| putative replication protein A1
[Arabidopsis thaliana] gi|26452416|dbj|BAC43293.1|
putative replication protein A1 [Arabidopsis thaliana]
gi|29029004|gb|AAO64881.1| At2g06510 [Arabidopsis
thaliana] gi|330250916|gb|AEC06010.1| replication factor
A1 [Arabidopsis thaliana]
Length = 640
Score = 715 bits (1846), Expect = 0.0
Identities = 358/518 (69%), Positives = 416/518 (80%), Gaps = 47/518 (9%)
Frame = -3
Query: 1417 MPINLTANAITEITKGNLNLKPLVQVIDIKLIGKNN--SQDRYRLLLSDSVSTQSAMLAT 1244
MP++LT NAIT I G++NLKPL+QV++IK+IG++ SQ+RYR L+SD VS Q AM+A
Sbjct: 1 MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60
Query: 1243 QLNHRVKTGVVRKGSVIQLIDYICSNVQNRQIIVILNMETIIPDCEMIGNP--------- 1091
QLN RVK+G KGS++QLIDYICS+V+ R++IV+LNMETI+ E IGNP
Sbjct: 61 QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTE 120
Query: 1090 --KIESGNCTMPPPR---------------------------------MQSVQPHYQPTP 1016
K SG +PPP SVQP YQ P
Sbjct: 121 AQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQ--P 178
Query: 1015 PPNYRSHGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 836
P +YR+HG I+KNEAPAR+IPIAALNPYQGRWAIKARVTAKGD+RRYNNA+GDGKVFSFD
Sbjct: 179 PASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFD 238
Query: 835 LLDSDGGEIRVTCFNSLVDKFYDVVEVGKVYMVSKGSLKPAQKNFNHLKNEWEILLETAS 656
LLD DGGEIRVTCFN+LVD+FYDV EVGKVY++SKGSLKPAQKNFNHLKNEWEI LE+ S
Sbjct: 239 LLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTS 298
Query: 655 TVDLCPDEDSSIPQQQFSFRPISDIENTENNSILDIIGVVTSVNPSVSIMRKNGMETQRR 476
TV+LCPDED SIP+QQFSFRPISDIEN ENN+ILD+IGVVTSVNPSV I+RKNGMET RR
Sbjct: 299 TVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRR 358
Query: 475 VLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGLSPVLAVKAGKVSDFSGKSVGTISS 296
+LNLKD+SG++VE+TLWGEFCNR+GR+L+EMVDS PVLA+KAGKVSDFSGKSVGTISS
Sbjct: 359 ILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISS 418
Query: 295 SQLFINPDFPEAYSLRDWFDRGGKDVAFLSISRDFAP-GAQRNEIRKTVSQIKAEGLGRA 119
+QLFINPDFPEA+ LR WFD GGKD A SISRD P G RNEIRK VSQIK EGLGR+
Sbjct: 419 TQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRS 478
Query: 118 DKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKV 5
DKPDW+TVKA++SF+KTD+FCYTACPLMIGD+QC+KKV
Sbjct: 479 DKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKV 516
>ref|XP_004157962.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 623
Score = 714 bits (1844), Expect = 0.0
Identities = 349/498 (70%), Positives = 424/498 (85%), Gaps = 27/498 (5%)
Frame = -3
Query: 1417 MPINLTANAITEITKGNLNLKPLVQVIDIKLIGKNNSQDRYRLLLSDSVSTQSAMLATQL 1238
MP++LT NAI+ I G++N KPLVQV+DIKLIG N+Q+RY LL+SD+VS + AMLATQL
Sbjct: 1 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG--NAQERYSLLISDAVSAEQAMLATQL 58
Query: 1237 NHRVKTGVVRKGSVIQLIDYICSNVQNRQIIVILNMETIIPDCEMIGNPKIES------- 1079
N VKTG V+KGSVIQLIDY+CS ++NR+IIV+L +ETII DCE+IGNPK +
Sbjct: 59 NDVVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQ 118
Query: 1078 --------------GNCTM----PPPRMQSVQPHYQPT--PPPNYRSHGAIVKNEAPARI 959
GN + P +QS Q QP PPPNY++HGAI+KNEAPARI
Sbjct: 119 KATPSVNLEQPAKVGNGHLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARI 178
Query: 958 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSLVD 779
IPIAALNPYQGRWAIKARVTAKGDLRRYNNA+GDGKVFSFDLLDSDGGEIRVTCFN++VD
Sbjct: 179 IPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVD 238
Query: 778 KFYDVVEVGKVYMVSKGSLKPAQKNFNHLKNEWEILLETASTVDLCPDEDSSIPQQQFSF 599
+FY+V+EVGKVY++SKGSLKPA+K+FNHLKNEWE+ LE +STV+LCPDED +IP+QQFSF
Sbjct: 239 RFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSF 298
Query: 598 RPISDIENTENNSILDIIGVVTSVNPSVSIMRKNGMETQRRVLNLKDQSGRSVELTLWGE 419
+PIS+IEN E NSILD+IG+VTS+NPS+ ++RKNGMETQRRV+ LKD SGRSVELT+WG+
Sbjct: 299 KPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGD 358
Query: 418 FCNREGRELQEMVDSGLSPVLAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWF 239
FCN+EG++LQE++ SGLSPVLAVK+GKVSDF+GKS+GTISS+QLFINPD PEA+ LR+W+
Sbjct: 359 FCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWY 418
Query: 238 DRGGKDVAFLSISRDFAPGAQRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNF 59
D GGK+ LSIS++ PG+ +N+IRKTVSQIK EGLGRADKPDW+TVKA++SF+KTD+F
Sbjct: 419 DGGGKNTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSF 478
Query: 58 CYTACPLMIGDRQCSKKV 5
CYTACPLMIGDRQC+KKV
Sbjct: 479 CYTACPLMIGDRQCNKKV 496
>ref|XP_004141065.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 694
Score = 714 bits (1844), Expect = 0.0
Identities = 349/498 (70%), Positives = 424/498 (85%), Gaps = 27/498 (5%)
Frame = -3
Query: 1417 MPINLTANAITEITKGNLNLKPLVQVIDIKLIGKNNSQDRYRLLLSDSVSTQSAMLATQL 1238
MP++LT NAI+ I G++N KPLVQV+DIKLIG N+Q+RY LL+SD+VS + AMLATQL
Sbjct: 1 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG--NAQERYSLLISDAVSAEQAMLATQL 58
Query: 1237 NHRVKTGVVRKGSVIQLIDYICSNVQNRQIIVILNMETIIPDCEMIGNPKIES------- 1079
N VKTG V+KGSVIQLIDY+CS ++NR+IIV+L +ETII DCE+IGNPK +
Sbjct: 59 NDVVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQ 118
Query: 1078 --------------GNCTM----PPPRMQSVQPHYQPT--PPPNYRSHGAIVKNEAPARI 959
GN + P +QS Q QP PPPNY++HGAI+KNEAPARI
Sbjct: 119 KATPSVNLEQPAKVGNGHLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARI 178
Query: 958 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSLVD 779
IPIAALNPYQGRWAIKARVTAKGDLRRYNNA+GDGKVFSFDLLDSDGGEIRVTCFN++VD
Sbjct: 179 IPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVD 238
Query: 778 KFYDVVEVGKVYMVSKGSLKPAQKNFNHLKNEWEILLETASTVDLCPDEDSSIPQQQFSF 599
+FY+V+EVGKVY++SKGSLKPA+K+FNHLKNEWE+ LE +STV+LCPDED +IP+QQFSF
Sbjct: 239 RFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSF 298
Query: 598 RPISDIENTENNSILDIIGVVTSVNPSVSIMRKNGMETQRRVLNLKDQSGRSVELTLWGE 419
+PIS+IEN E NSILD+IG+VTS+NPS+ ++RKNGMETQRRV+ LKD SGRSVELT+WG+
Sbjct: 299 KPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGD 358
Query: 418 FCNREGRELQEMVDSGLSPVLAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWF 239
FCN+EG++LQE++ SGLSPVLAVK+GKVSDF+GKS+GTISS+QLFINPD PEA+ LR+W+
Sbjct: 359 FCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWY 418
Query: 238 DRGGKDVAFLSISRDFAPGAQRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNF 59
D GGK+ LSIS++ PG+ +N+IRKTVSQIK EGLGRADKPDW+TVKA++SF+KTD+F
Sbjct: 419 DGGGKNTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSF 478
Query: 58 CYTACPLMIGDRQCSKKV 5
CYTACPLMIGDRQC+KKV
Sbjct: 479 CYTACPLMIGDRQCNKKV 496