BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024532
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containi...    83   2e-14
ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containi...    82   3e-14
ref|XP_002522615.1| pentatricopeptide repeat-containing protein,...    79   3e-13
gb|AFK33523.1| unknown [Lotus japonicus]                               78   9e-13
ref|NP_568214.1| pentatricopeptide repeat-containing protein [Ar...    77   1e-12

>ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 395

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 43/91 (47%), Positives = 64/91 (70%)
 Frame = +1

Query: 58  RINSHPALKLNQTRFLSNTFSSIPLESDDDLEKSKQDDLKTKIFKLRFSKRSVMTLLEKW 237
           R NS  A  LN+TRF+S+   ++  +  ++  +   DDL+++IF+LR  KRS   +L+KW
Sbjct: 11  RRNSGLACLLNRTRFVSS--GAVSSDLVEESVEGVDDDLRSRIFRLRLPKRSATNVLQKW 68

Query: 238 VADGNNVTLFELRNIARDLNKSQRYKHALEI 330
           V  GN VTL +LR+I+++L +SQRYKHALEI
Sbjct: 69  VLQGNPVTLSQLRDISKELRRSQRYKHALEI 99


>ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 399

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
 Frame = +1

Query: 10  MTMRSLSSLLKRPLIERINSHPALKLNQTRFLSNTFSSIPLESDDDLEKSKQ--DDLKTK 183
           M  RSL   L+R    R NS  A  LN+TRF+S+        S D +E+S +  DDL+++
Sbjct: 1   MAHRSLFLSLRRFSSCR-NSGLACVLNRTRFVSSG-----AVSSDLVEESVEGDDDLRSR 54

Query: 184 IFKLRFSKRSVMTLLEKWVADGNNVTLFELRNIARDLNKSQRYKHALEI 330
           IF+LR  KRS   +L+KWV  GN +TL +LR+I+++L +SQRYKHALEI
Sbjct: 55  IFRLRLPKRSATNVLQKWVLQGNPITLSQLRDISKELRRSQRYKHALEI 103


>ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538091|gb|EEF39702.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 426

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
 Frame = +1

Query: 16  MRSLSSLLKRPLIERINSHPALKLNQTRFLSNTFSSI-----PLESDDDLEKSKQDDLKT 180
           M S S L     I RINS      N  ++  N F S       + +++   K  +DDLK+
Sbjct: 19  MASRSFLFNLQRICRINSGIGSLSNSKKWEFNHFLSSGTLRNEVLAEESSSKEIEDDLKS 78

Query: 181 KIFKLRFSKRSVMTLLEKWVADGNNVTLFELRNIARDLNKSQRYKHALEI 330
           +IF+LR  KRS   ++  WV++GN VT  ELRNI+ +L K QRYKHALEI
Sbjct: 79  RIFRLRLPKRSATNIIHNWVSEGNTVTASELRNISNELRKLQRYKHALEI 128


>gb|AFK33523.1| unknown [Lotus japonicus]
          Length = 358

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/82 (48%), Positives = 55/82 (67%)
 Frame = +1

Query: 85  LNQTRFLSNTFSSIPLESDDDLEKSKQDDLKTKIFKLRFSKRSVMTLLEKWVADGNNVTL 264
           LN+ RF+S+   S      DD       DL+++I +LR  KRS   +L KWV +GN+VT+
Sbjct: 30  LNRARFVSSGAVSTDFVESDD-------DLRSRILRLRLPKRSATNILHKWVLEGNSVTV 82

Query: 265 FELRNIARDLNKSQRYKHALEI 330
            ELR+IA++L +SQRYKHALEI
Sbjct: 83  SELRDIAKELRRSQRYKHALEI 104


>ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75165070|sp|Q94B59.1|PP372_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g09450, mitochondrial; Flags: Precursor
           gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis
           thaliana] gi|27311913|gb|AAO00922.1| putative protein
           [Arabidopsis thaliana] gi|332004012|gb|AED91395.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 409

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 49/60 (81%)
 Frame = +1

Query: 151 EKSKQDDLKTKIFKLRFSKRSVMTLLEKWVADGNNVTLFELRNIARDLNKSQRYKHALEI 330
           E  ++DDLK++IF+LR  KRS  T+LEKW+ +GN +T+ ELR I+++L +++RYKHALE+
Sbjct: 50  ESEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEV 109