BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024468
         (937 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containi...   330   2e-88
ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containi...   314   2e-83
ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containi...   314   2e-83
ref|XP_003589614.1| Pentatricopeptide repeat-containing protein ...   314   2e-83
ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containi...   305   1e-80

>ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62350-like [Vitis vinifera]
          Length = 248

 Score =  330 bits (847), Expect = 2e-88
 Identities = 160/190 (84%), Positives = 179/190 (94%)
 Frame = +1

Query: 106 TASSPSLSIWRRKKEMGKEALIIVKELKRLKSDGIRFDRFMKSQVSRLLRSDLVAVLAEV 285
           +AS PSLSIWRRKKEMGKE LI  KELKRL+SD +RFDRFM+S VSRLLRSDLV+VLAE 
Sbjct: 40  SASRPSLSIWRRKKEMGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEF 99

Query: 286 QRQDQVFLSIKIYDVVRKEIWYRPDMFFYRDMLMMLARNKRVDEIRQVREDLRREDVLFD 465
           QRQDQVFLS+K+YDVVRKEIWYRPDM+FYRDMLMMLARNK+VDE ++V EDL+RE+VLFD
Sbjct: 100 QRQDQVFLSMKLYDVVRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFD 159

Query: 466 QHTYGDIVRSFLDGGMPSEAMDLYEEMRCSPDPPLSLPYRVILKGLIPYPELRERVKDDF 645
           QHT+GDIVR+FLDGG+PSEAMD+YEEMR SPDPPLSLPYRVILKGL+PYPELRE+VKDDF
Sbjct: 160 QHTFGDIVRAFLDGGLPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDF 219

Query: 646 LELFPDMIVY 675
           LELFP MIVY
Sbjct: 220 LELFPGMIVY 229


>ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62350-like [Glycine max]
          Length = 234

 Score =  314 bits (805), Expect = 2e-83
 Identities = 149/192 (77%), Positives = 175/192 (91%)
 Frame = +1

Query: 100 SSTASSPSLSIWRRKKEMGKEALIIVKELKRLKSDGIRFDRFMKSQVSRLLRSDLVAVLA 279
           SS ASSPSLSIWRRKKEMGKE L++ KELKR +SD +R DRF++S VSRLL+SDLVAVLA
Sbjct: 21  SSGASSPSLSIWRRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLA 80

Query: 280 EVQRQDQVFLSIKIYDVVRKEIWYRPDMFFYRDMLMMLARNKRVDEIRQVREDLRREDVL 459
           E QRQ+Q FL +K+YD+VRKEIWYRPDMFFYRDMLMMLARNKRV+E ++V  DL+ E+VL
Sbjct: 81  EFQRQNQFFLCVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVL 140

Query: 460 FDQHTYGDIVRSFLDGGMPSEAMDLYEEMRCSPDPPLSLPYRVILKGLIPYPELRERVKD 639
           FDQHT+GDI+R+FLD G+PSEAMD+YEEMR SP+PPLSLP+RVILKGLIPYPELRE+VKD
Sbjct: 141 FDQHTFGDIIRAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKD 200

Query: 640 DFLELFPDMIVY 675
           DFLE+FP MI+Y
Sbjct: 201 DFLEIFPGMIIY 212


>ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62350-like [Glycine max]
          Length = 232

 Score =  314 bits (805), Expect = 2e-83
 Identities = 149/192 (77%), Positives = 175/192 (91%)
 Frame = +1

Query: 100 SSTASSPSLSIWRRKKEMGKEALIIVKELKRLKSDGIRFDRFMKSQVSRLLRSDLVAVLA 279
           SS ASSPSLSIWRRKKEMGKE L++ KELKR +SD +R DRF++S VSRLL+SDLVAVLA
Sbjct: 23  SSGASSPSLSIWRRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLA 82

Query: 280 EVQRQDQVFLSIKIYDVVRKEIWYRPDMFFYRDMLMMLARNKRVDEIRQVREDLRREDVL 459
           E QRQ+Q FL +K+YD+VRKEIWYRPDMFFYRDMLMMLARNKRV+E ++V  DL+ E+VL
Sbjct: 83  EFQRQNQFFLCVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVL 142

Query: 460 FDQHTYGDIVRSFLDGGMPSEAMDLYEEMRCSPDPPLSLPYRVILKGLIPYPELRERVKD 639
           FDQHT+GDI+R+FLD G+PSEAMD+YEEMR SP+PPLSLP+RVILKGLIPYPELRE+VKD
Sbjct: 143 FDQHTFGDIIRAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKD 202

Query: 640 DFLELFPDMIVY 675
           DFLE+FP MI+Y
Sbjct: 203 DFLEIFPGMIIY 214


>ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355478662|gb|AES59865.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 232

 Score =  314 bits (804), Expect = 2e-83
 Identities = 157/218 (72%), Positives = 186/218 (85%)
 Frame = +1

Query: 22  MLRSAANSLQRRATTLKSLILNGPHFSSTASSPSLSIWRRKKEMGKEALIIVKELKRLKS 201
           MLR A   L+R  ++  S  + G     +AS PSLSIWRRKKE+GKE LII KELKRL+S
Sbjct: 1   MLRLA---LRRVLSSSSSRFITG-----SASKPSLSIWRRKKELGKEGLIITKELKRLQS 52

Query: 202 DGIRFDRFMKSQVSRLLRSDLVAVLAEVQRQDQVFLSIKIYDVVRKEIWYRPDMFFYRDM 381
           D +R DRF++S VSRLL+SDLV+VL E  RQD VFLS+K+YD+VRKEIWYRPDMFFYRDM
Sbjct: 53  DPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDM 112

Query: 382 LMMLARNKRVDEIRQVREDLRREDVLFDQHTYGDIVRSFLDGGMPSEAMDLYEEMRCSPD 561
           LMMLARNKRVDE ++V +DL+ E VLFDQHT+GDIVR++LD GMPSEAMD+YEEMR SP+
Sbjct: 113 LMMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQSPE 172

Query: 562 PPLSLPYRVILKGLIPYPELRERVKDDFLELFPDMIVY 675
           PPLSLP+RVILKGLIPYPELRE++KDDFLE+FPDMI+Y
Sbjct: 173 PPLSLPFRVILKGLIPYPELREKIKDDFLEVFPDMIIY 210


>ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62350-like [Cucumis sativus]
          Length = 256

 Score =  305 bits (781), Expect = 1e-80
 Identities = 149/192 (77%), Positives = 174/192 (90%)
 Frame = +1

Query: 100 SSTASSPSLSIWRRKKEMGKEALIIVKELKRLKSDGIRFDRFMKSQVSRLLRSDLVAVLA 279
           + +ASSPSLSIWRRKKEMGKE LI+VKELKRL+S+ IR DRF+ S VSRLL+SDLVAVL 
Sbjct: 46  TGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLV 105

Query: 280 EVQRQDQVFLSIKIYDVVRKEIWYRPDMFFYRDMLMMLARNKRVDEIRQVREDLRREDVL 459
           E+QRQ+ VFL +K+Y+VVRKE+WYRPDMFFYRDMLMMLA+NKRV+E +QV EDL++E VL
Sbjct: 106 ELQRQNHVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVL 165

Query: 460 FDQHTYGDIVRSFLDGGMPSEAMDLYEEMRCSPDPPLSLPYRVILKGLIPYPELRERVKD 639
           FDQHT+GDI+R++LD  M SEAMD+Y EMR SPD PLSLP+RVILKGLIPYPELRE+VKD
Sbjct: 166 FDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKD 225

Query: 640 DFLELFPDMIVY 675
           DFLELFPDMIVY
Sbjct: 226 DFLELFPDMIVY 237