BLASTX nr result

ID: Coptis25_contig00024462 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024462
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282322.1| PREDICTED: uncharacterized protein LOC100241...    63   3e-08
ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]    60   2e-07

>ref|XP_002282322.1| PREDICTED: uncharacterized protein LOC100241598 [Vitis vinifera]
           gi|297746029|emb|CBI16085.3| unnamed protein product
           [Vitis vinifera]
          Length = 393

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 39/109 (35%), Positives = 45/109 (41%), Gaps = 51/109 (46%)
 Frame = +3

Query: 12  FHGGGYIPQQDGVGDGAYDVFQNE------------------------------------ 83
           +H  GYIPQQDG GD A +VF+ E                                    
Sbjct: 209 YHTSGYIPQQDGAGDPAPEVFEVEVSQGSNSIKGHDILTKANREIFPQVAGSYVRIPQLD 268

Query: 84  ---------------LYPYQGVASEDYNTVNTPAPLDLHAGTPNVGAQN 185
                          +Y YQGV +EDYN VNTPAP D+ AGTP VG QN
Sbjct: 269 GPIPDPYEDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQAGTPAVGIQN 317


>ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|222845598|gb|EEE83145.1|
           predicted protein [Populus trichocarpa]
          Length = 409

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 38/102 (37%), Positives = 45/102 (44%), Gaps = 41/102 (40%)
 Frame = +3

Query: 3   APHFHGGGYIPQQDGVGDGAYDVFQNE--------------------------------- 83
           AP ++ GG+IPQQDG  D A +V Q E                                 
Sbjct: 231 APKYNNGGFIPQQDGAVDSASEVSQVECDTITTKNREILARVSRSYVKIPQVDGPIPDPY 290

Query: 84  --------LYPYQGVASEDYNTVNTPAPLDLHAGTPNVGAQN 185
                   +Y YQGVA+EDYN  NTPAP DL A TP V +QN
Sbjct: 291 DDMLSTPNIYNYQGVANEDYNIANTPAPNDLQASTPAVVSQN 332


>emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]
          Length = 630

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = +3

Query: 30  IPQQDG-VGDGAYDVFQN-ELYPYQGVASEDYNTVNTPAPLDLHAGTPNVGAQN 185
           IPQ DG + D   DV     +Y YQGV +EDYN VNTPAP D+ AGTP VG QN
Sbjct: 340 IPQLDGPIPDPYEDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQAGTPAVGIQN 393


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