BLASTX nr result

ID: Coptis25_contig00024451 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024451
         (577 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278331.1| PREDICTED: 1-aminocyclopropane-1-carboxylate...   138   6e-31
emb|CAN77674.1| hypothetical protein VITISV_013720 [Vitis vinifera]   138   6e-31
ref|XP_002317225.1| predicted protein [Populus trichocarpa] gi|2...   133   2e-29
ref|XP_002515973.1| conserved hypothetical protein [Ricinus comm...   129   5e-28
ref|XP_002299737.1| predicted protein [Populus trichocarpa] gi|2...   124   1e-26

>ref|XP_002278331.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Vitis
           vinifera]
          Length = 373

 Score =  138 bits (348), Expect = 6e-31
 Identities = 79/173 (45%), Positives = 106/173 (61%)
 Frame = -1

Query: 559 EDQQHFRAPPPSPVAHAINRRPSFVNEDEISDFLKHSXXXXXXXXXXXDQIFPKQVQVKN 380
           +++  FRAPPPSP+A    RR S  N+D +++FL+HS            ++FP+Q  V  
Sbjct: 10  DNRLDFRAPPPSPIA--TGRRSSVTNDDVLAEFLEHSLRVPDLILPD--RVFPRQRSVDA 65

Query: 379 LPEIDLQSLLSSENRTIANFLESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKK 200
            P+ID Q+L S+E  ++A  LES +G GCFQLVNHG+  +LIRSV+ AAAG+F +  +KK
Sbjct: 66  PPKIDFQTLDSTETDSVARILESFSGTGCFQLVNHGIPCNLIRSVTTAAAGVFRISPEKK 125

Query: 199 TAVSRSSERVYGFXXXXXXXXXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNF 41
             VSRS E++YGF               EFVW RDE LK  MEGI    +SNF
Sbjct: 126 ATVSRSQEKIYGF-EEIHEEDESEMSSEEFVWGRDENLKLEMEGIWPLAYSNF 177


>emb|CAN77674.1| hypothetical protein VITISV_013720 [Vitis vinifera]
          Length = 373

 Score =  138 bits (348), Expect = 6e-31
 Identities = 79/173 (45%), Positives = 106/173 (61%)
 Frame = -1

Query: 559 EDQQHFRAPPPSPVAHAINRRPSFVNEDEISDFLKHSXXXXXXXXXXXDQIFPKQVQVKN 380
           +++  FRAPPPSP+A    RR S  N+D +++FL+HS            ++FP+Q  V  
Sbjct: 10  DNRLDFRAPPPSPIA--TGRRSSVTNDDVLAEFLEHSLRVPDLILPD--RVFPRQRSVDA 65

Query: 379 LPEIDLQSLLSSENRTIANFLESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKK 200
            P+ID Q+L S+E  ++A  LES +G GCFQLVNHG+  +LIRSV+ AAAG+F +  +KK
Sbjct: 66  PPKIDFQTLDSTETDSVARILESFSGTGCFQLVNHGIPCNLIRSVTTAAAGVFRISPEKK 125

Query: 199 TAVSRSSERVYGFXXXXXXXXXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNF 41
             VSRS E++YGF               EFVW RDE LK  MEGI    +SNF
Sbjct: 126 ATVSRSQEKIYGF-EEIHEEDESEMSSEEFVWGRDENLKLEMEGIWPLAYSNF 177


>ref|XP_002317225.1| predicted protein [Populus trichocarpa] gi|222860290|gb|EEE97837.1|
           predicted protein [Populus trichocarpa]
          Length = 373

 Score =  133 bits (335), Expect = 2e-29
 Identities = 78/173 (45%), Positives = 100/173 (57%)
 Frame = -1

Query: 559 EDQQHFRAPPPSPVAHAINRRPSFVNEDEISDFLKHSXXXXXXXXXXXDQIFPKQVQVKN 380
           E+   FRAPPPSP+A    RR S  N+  +++FL+HS              FPKQ  V+ 
Sbjct: 10  ENPIDFRAPPPSPIASG--RRSSVTNDGVLNEFLEHSLRVPDLILPD--NFFPKQKIVET 65

Query: 379 LPEIDLQSLLSSENRTIANFLESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKK 200
            P ID QSL S E+ ++   L+S+A IGCFQLVN G+ S+ I+ VS+ AAGIF LP +KK
Sbjct: 66  PPRIDCQSLNSKESNSVLKTLDSIARIGCFQLVNFGIPSEFIKLVSVMAAGIFQLPSEKK 125

Query: 199 TAVSRSSERVYGFXXXXXXXXXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNF 41
            AV +S E+ YGF               EFVW +DE LK  ME I   G+SNF
Sbjct: 126 AAVMKSPEKPYGFEEVHGDQEAENELSEEFVWSKDESLKLDMERIWPTGYSNF 178


>ref|XP_002515973.1| conserved hypothetical protein [Ricinus communis]
           gi|223544878|gb|EEF46393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score =  129 bits (323), Expect = 5e-28
 Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 1/169 (0%)
 Frame = -1

Query: 544 FRAPPPSPVAHAINRRPSFVNEDEISDFLKHSXXXXXXXXXXXDQIFPKQVQVKNLPEID 365
           FRAPPPSP+A    RR S  N+D +++FL+HS            +IFP+Q  ++  P ID
Sbjct: 17  FRAPPPSPIASG--RRSSVANDDVLTEFLEHSLRVPDLVLPD--KIFPRQKILETPPRID 72

Query: 364 LQSLLSS-ENRTIANFLESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKKTAVS 188
            QSL S+ ++ +I   L+S++ IGCFQLVN+G+ SD  R V   AAGIF +P +K+ AV+
Sbjct: 73  FQSLNSATDSDSIPKILDSLSRIGCFQLVNYGVPSDFARMVLAMAAGIFSVPPEKRAAVT 132

Query: 187 RSSERVYGFXXXXXXXXXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNF 41
           RS E++YGF               EF+WCRD+ L+  MEGI   G+SNF
Sbjct: 133 RSPEKLYGF--EEVHGEEESEVSEEFLWCRDKNLRLDMEGIWPSGYSNF 179


>ref|XP_002299737.1| predicted protein [Populus trichocarpa] gi|222846995|gb|EEE84542.1|
           predicted protein [Populus trichocarpa]
          Length = 294

 Score =  124 bits (311), Expect = 1e-26
 Identities = 77/174 (44%), Positives = 99/174 (56%), Gaps = 1/174 (0%)
 Frame = -1

Query: 559 EDQQHFRAPPPSPVAHAINRRPSFVNEDEISDFLKHSXXXXXXXXXXXDQIFPKQVQVKN 380
           E+   FRAPPPSP+A    RR S  N++ +++FL+HS            +IFP+Q  V+ 
Sbjct: 3   ENPIDFRAPPPSPIASG--RRSSVTNDEVLTEFLEHSLRVPDLILPD--KIFPRQKIVET 58

Query: 379 LPEIDLQSLLSSENRTIANFLESVAGIGCFQLVNHGLSSDLIRSVSIAAAGIFGLPVDKK 200
            P ID QSL+S E+ ++   L+S+A IGCFQLVN G+ +           GIF LP +KK
Sbjct: 59  PPRIDCQSLISGESDSVLRMLDSIARIGCFQLVNFGIPT-----------GIFQLPPEKK 107

Query: 199 TAVSRSSERVYGF-XXXXXXXXXXXXXXXEFVWCRDEGLKSVMEGIRLQGFSNF 41
            AVSRS ER YGF                EFVWC+DE LK  MEGI   G+SNF
Sbjct: 108 EAVSRSLERPYGFEEVHGDHQEAESEVSEEFVWCKDESLKLDMEGIWPTGYSNF 161


Top