BLASTX nr result
ID: Coptis25_contig00024423
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00024423
(575 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003637511.1| 40S ribosomal protein S9 [Medicago truncatul... 53 8e-10
gb|AFK46709.1| unknown [Lotus japonicus] 53 1e-09
ref|XP_003549666.1| PREDICTED: 40S ribosomal protein S9-2-like [... 53 1e-09
ref|XP_003523030.1| PREDICTED: 40S ribosomal protein S9-2-like [... 53 1e-09
ref|NP_001049004.1| Os03g0154700 [Oryza sativa Japonica Group] g... 51 4e-09
>ref|XP_003637511.1| 40S ribosomal protein S9 [Medicago truncatula]
gi|355503446|gb|AES84649.1| 40S ribosomal protein S9
[Medicago truncatula]
Length = 224
Score = 53.1 bits (126), Expect(2) = 8e-10
Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
GLR K EL+ YALSRIRNNARNLLTLDEKN RRI G
Sbjct: 64 GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 102
Score = 35.4 bits (80), Expect(2) = 8e-10
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 28 SKQSTTKNNIMVNVSHYRNYGNTFKKPLR 114
SK +MV V+ YRNYG TFKKP R
Sbjct: 18 SKIYLCSGGVMVKVAFYRNYGKTFKKPRR 46
>gb|AFK46709.1| unknown [Lotus japonicus]
Length = 197
Score = 53.1 bits (126), Expect(2) = 1e-09
Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
GLR K EL+ YALSRIRNNARNLLTLDEKN RRI G
Sbjct: 37 GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 75
Score = 35.0 bits (79), Expect(2) = 1e-09
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 58 MVNVSHYRNYGNTFKKPLR 114
MV+VS YRNYG TFKKP R
Sbjct: 1 MVHVSFYRNYGKTFKKPRR 19
>ref|XP_003549666.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max]
Length = 197
Score = 53.1 bits (126), Expect(2) = 1e-09
Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
GLR K EL+ YALSRIRNNARNLLTLDEKN RRI G
Sbjct: 37 GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 75
Score = 35.0 bits (79), Expect(2) = 1e-09
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 58 MVNVSHYRNYGNTFKKPLR 114
MV+VS YRNYG TFKKP R
Sbjct: 1 MVHVSFYRNYGKTFKKPRR 19
>ref|XP_003523030.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max]
gi|356516778|ref|XP_003527070.1| PREDICTED: 40S
ribosomal protein S9-2-like [Glycine max]
gi|255640554|gb|ACU20562.1| unknown [Glycine max]
Length = 197
Score = 53.1 bits (126), Expect(2) = 1e-09
Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
GLR K EL+ YALSRIRNNARNLLTLDEKN RRI G
Sbjct: 37 GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 75
Score = 35.0 bits (79), Expect(2) = 1e-09
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 58 MVNVSHYRNYGNTFKKPLR 114
MV+VS YRNYG TFKKP R
Sbjct: 1 MVHVSFYRNYGKTFKKPRR 19
>ref|NP_001049004.1| Os03g0154700 [Oryza sativa Japonica Group]
gi|115486179|ref|NP_001068233.1| Os11g0602600 [Oryza
sativa Japonica Group] gi|77551802|gb|ABA94599.1| 40S
ribosomal protein S9, putative, expressed [Oryza sativa
Japonica Group] gi|77551804|gb|ABA94601.1| 40S ribosomal
protein S9, putative, expressed [Oryza sativa Japonica
Group] gi|108706253|gb|ABF94048.1| 40S ribosomal protein
S9, putative, expressed [Oryza sativa Japonica Group]
gi|108864567|gb|ABG22548.1| 40S ribosomal protein S9,
putative, expressed [Oryza sativa Japonica Group]
gi|113547475|dbj|BAF10918.1| Os03g0154700 [Oryza sativa
Japonica Group] gi|113645455|dbj|BAF28596.1|
Os11g0602600 [Oryza sativa Japonica Group]
gi|125534929|gb|EAY81477.1| hypothetical protein
OsI_36650 [Oryza sativa Indica Group]
gi|125577658|gb|EAZ18880.1| hypothetical protein
OsJ_34422 [Oryza sativa Japonica Group]
gi|149390861|gb|ABR25448.1| 40S ribosomal protein S9
[Oryza sativa Indica Group] gi|215678994|dbj|BAG96424.1|
unnamed protein product [Oryza sativa Japonica Group]
gi|215692450|dbj|BAG87870.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215704252|dbj|BAG93092.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215737426|dbj|BAG96556.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215737741|dbj|BAG96871.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215740779|dbj|BAG96935.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218186015|gb|EEC68442.1| hypothetical protein
OsI_36651 [Oryza sativa Indica Group]
gi|222616230|gb|EEE52362.1| hypothetical protein
OsJ_34424 [Oryza sativa Japonica Group]
gi|222624211|gb|EEE58343.1| hypothetical protein
OsJ_09456 [Oryza sativa Japonica Group]
Length = 195
Score = 51.2 bits (121), Expect(2) = 4e-09
Identities = 29/39 (74%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
GLR K EL+ YALSRIRNNAR+LLTLDEKN RRI G
Sbjct: 37 GLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEG 75
Score = 35.0 bits (79), Expect(2) = 4e-09
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 58 MVNVSHYRNYGNTFKKPLR 114
MV+VS YRNYG TFKKP R
Sbjct: 1 MVHVSFYRNYGKTFKKPRR 19