BLASTX nr result

ID: Coptis25_contig00024423 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024423
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003637511.1| 40S ribosomal protein S9 [Medicago truncatul...    53   8e-10
gb|AFK46709.1| unknown [Lotus japonicus]                               53   1e-09
ref|XP_003549666.1| PREDICTED: 40S ribosomal protein S9-2-like [...    53   1e-09
ref|XP_003523030.1| PREDICTED: 40S ribosomal protein S9-2-like [...    53   1e-09
ref|NP_001049004.1| Os03g0154700 [Oryza sativa Japonica Group] g...    51   4e-09

>ref|XP_003637511.1| 40S ribosomal protein S9 [Medicago truncatula]
           gi|355503446|gb|AES84649.1| 40S ribosomal protein S9
           [Medicago truncatula]
          Length = 224

 Score = 53.1 bits (126), Expect(2) = 8e-10
 Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +3

Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
           GLR K EL+   YALSRIRNNARNLLTLDEKN RRI  G
Sbjct: 64  GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 102



 Score = 35.4 bits (80), Expect(2) = 8e-10
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 28  SKQSTTKNNIMVNVSHYRNYGNTFKKPLR 114
           SK       +MV V+ YRNYG TFKKP R
Sbjct: 18  SKIYLCSGGVMVKVAFYRNYGKTFKKPRR 46


>gb|AFK46709.1| unknown [Lotus japonicus]
          Length = 197

 Score = 53.1 bits (126), Expect(2) = 1e-09
 Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +3

Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
           GLR K EL+   YALSRIRNNARNLLTLDEKN RRI  G
Sbjct: 37  GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 75



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 58  MVNVSHYRNYGNTFKKPLR 114
           MV+VS YRNYG TFKKP R
Sbjct: 1   MVHVSFYRNYGKTFKKPRR 19


>ref|XP_003549666.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max]
          Length = 197

 Score = 53.1 bits (126), Expect(2) = 1e-09
 Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +3

Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
           GLR K EL+   YALSRIRNNARNLLTLDEKN RRI  G
Sbjct: 37  GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 75



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 58  MVNVSHYRNYGNTFKKPLR 114
           MV+VS YRNYG TFKKP R
Sbjct: 1   MVHVSFYRNYGKTFKKPRR 19


>ref|XP_003523030.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max]
           gi|356516778|ref|XP_003527070.1| PREDICTED: 40S
           ribosomal protein S9-2-like [Glycine max]
           gi|255640554|gb|ACU20562.1| unknown [Glycine max]
          Length = 197

 Score = 53.1 bits (126), Expect(2) = 1e-09
 Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +3

Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
           GLR K EL+   YALSRIRNNARNLLTLDEKN RRI  G
Sbjct: 37  GLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEG 75



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 58  MVNVSHYRNYGNTFKKPLR 114
           MV+VS YRNYG TFKKP R
Sbjct: 1   MVHVSFYRNYGKTFKKPRR 19


>ref|NP_001049004.1| Os03g0154700 [Oryza sativa Japonica Group]
           gi|115486179|ref|NP_001068233.1| Os11g0602600 [Oryza
           sativa Japonica Group] gi|77551802|gb|ABA94599.1| 40S
           ribosomal protein S9, putative, expressed [Oryza sativa
           Japonica Group] gi|77551804|gb|ABA94601.1| 40S ribosomal
           protein S9, putative, expressed [Oryza sativa Japonica
           Group] gi|108706253|gb|ABF94048.1| 40S ribosomal protein
           S9, putative, expressed [Oryza sativa Japonica Group]
           gi|108864567|gb|ABG22548.1| 40S ribosomal protein S9,
           putative, expressed [Oryza sativa Japonica Group]
           gi|113547475|dbj|BAF10918.1| Os03g0154700 [Oryza sativa
           Japonica Group] gi|113645455|dbj|BAF28596.1|
           Os11g0602600 [Oryza sativa Japonica Group]
           gi|125534929|gb|EAY81477.1| hypothetical protein
           OsI_36650 [Oryza sativa Indica Group]
           gi|125577658|gb|EAZ18880.1| hypothetical protein
           OsJ_34422 [Oryza sativa Japonica Group]
           gi|149390861|gb|ABR25448.1| 40S ribosomal protein S9
           [Oryza sativa Indica Group] gi|215678994|dbj|BAG96424.1|
           unnamed protein product [Oryza sativa Japonica Group]
           gi|215692450|dbj|BAG87870.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215704252|dbj|BAG93092.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215737426|dbj|BAG96556.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215737741|dbj|BAG96871.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215740779|dbj|BAG96935.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218186015|gb|EEC68442.1| hypothetical protein
           OsI_36651 [Oryza sativa Indica Group]
           gi|222616230|gb|EEE52362.1| hypothetical protein
           OsJ_34424 [Oryza sativa Japonica Group]
           gi|222624211|gb|EEE58343.1| hypothetical protein
           OsJ_09456 [Oryza sativa Japonica Group]
          Length = 195

 Score = 51.2 bits (121), Expect(2) = 4e-09
 Identities = 29/39 (74%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +3

Query: 120 GLRSKIELYI--YALSRIRNNARNLLTLDEKNQRRILFG 230
           GLR K EL+   YALSRIRNNAR+LLTLDEKN RRI  G
Sbjct: 37  GLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEG 75



 Score = 35.0 bits (79), Expect(2) = 4e-09
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 58  MVNVSHYRNYGNTFKKPLR 114
           MV+VS YRNYG TFKKP R
Sbjct: 1   MVHVSFYRNYGKTFKKPRR 19


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