BLASTX nr result
ID: Coptis25_contig00024393
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00024393
(1155 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-co... 140 3e-32
emb|CBI15155.3| unnamed protein product [Vitis vinifera] 135 3e-32
emb|CAN78815.1| hypothetical protein VITISV_041732 [Vitis vinifera] 121 3e-32
ref|NP_196398.2| SNF2 and helicase domain-containing protein [Ar... 138 3e-30
ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis ... 135 2e-29
>ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Vitis vinifera]
Length = 1280
Score = 121 bits (303), Expect(2) = 3e-32
Identities = 57/94 (60%), Positives = 69/94 (73%)
Frame = -2
Query: 773 FTISSEICSPDSFMITPLPLPGFPYTGEFDCLQKLSSWLSFVDPSHYTQNHGGEKASVYK 594
F + EICSPDSF ITP + GF Y GE +CLQ+L+ L+ V PSHYTQNH G KA VYK
Sbjct: 76 FRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLANVVPSHYTQNHSGGKACVYK 135
Query: 593 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 492
L DYD VL+CLK +G+E +EIPW T NVV ++S
Sbjct: 136 LGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLS 169
Score = 44.7 bits (104), Expect(2) = 3e-32
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -3
Query: 490 SFVANRWIPCVPEHLPDNDVDKLLKFLPKGNCNCLLLYE 374
SFV +W+PC PEHL D+ VD+L+ LPK + LL ++
Sbjct: 171 SFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQ 209
Score = 140 bits (353), Expect = 6e-31
Identities = 69/89 (77%), Positives = 74/89 (83%)
Frame = -2
Query: 269 IKAILDFVAKVTHKVLLSGTPSLSRPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQG 90
IKA+LD KV VLLSGTPSLSRPYDI HQI+MLWPGLLG KYEFAK YC V+G
Sbjct: 340 IKAVLDVAMKVRRIVLLSGTPSLSRPYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVRG 399
Query: 89 AQGKVFQDFSKGVRLEELNVLLTQTVMIR 3
+QGKVFQDFSKG+RLEELNVLL QTVMIR
Sbjct: 400 SQGKVFQDFSKGIRLEELNVLLKQTVMIR 428
Score = 80.5 bits (197), Expect = 7e-13
Identities = 38/49 (77%), Positives = 39/49 (79%)
Frame = -1
Query: 405 KAIAIACCFMNEGSILVVCPAILRFSWAEELERWLPILSPTGIHLDKSH 259
+AIAIA CFMNEG ILVVCPAILRFSWAEELERWLP P IHL H
Sbjct: 236 QAIAIASCFMNEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGH 284
>emb|CBI15155.3| unnamed protein product [Vitis vinifera]
Length = 1201
Score = 121 bits (303), Expect(2) = 3e-32
Identities = 57/94 (60%), Positives = 69/94 (73%)
Frame = -2
Query: 773 FTISSEICSPDSFMITPLPLPGFPYTGEFDCLQKLSSWLSFVDPSHYTQNHGGEKASVYK 594
F + EICSPDSF ITP + GF Y GE +CLQ+L+ L+ V PSHYTQNH G KA VYK
Sbjct: 76 FRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLANVVPSHYTQNHSGGKACVYK 135
Query: 593 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 492
L DYD VL+CLK +G+E +EIPW T NVV ++S
Sbjct: 136 LGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLS 169
Score = 44.7 bits (104), Expect(2) = 3e-32
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -3
Query: 490 SFVANRWIPCVPEHLPDNDVDKLLKFLPKGNCNCLLLYE 374
SFV +W+PC PEHL D+ VD+L+ LPK + LL ++
Sbjct: 171 SFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQ 209
Score = 135 bits (341), Expect = 1e-29
Identities = 69/90 (76%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Frame = -2
Query: 269 IKAILDFVAKVTHKVLLSGTPSLSR-PYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQ 93
IKA+LD KV VLLSGTPSLSR PYDI HQI+MLWPGLLG KYEFAK YC V+
Sbjct: 341 IKAVLDVAMKVRRIVLLSGTPSLSRLPYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVR 400
Query: 92 GAQGKVFQDFSKGVRLEELNVLLTQTVMIR 3
G+QGKVFQDFSKG+RLEELNVLL QTVMIR
Sbjct: 401 GSQGKVFQDFSKGIRLEELNVLLKQTVMIR 430
Score = 72.4 bits (176), Expect = 2e-10
Identities = 33/50 (66%), Positives = 35/50 (70%)
Frame = -1
Query: 408 QKAIAIACCFMNEGSILVVCPAILRFSWAEELERWLPILSPTGIHLDKSH 259
Q + CC +NEG ILVVCPAILRFSWAEELERWLP P IHL H
Sbjct: 236 QVRVTTECCDINEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGH 285
>emb|CAN78815.1| hypothetical protein VITISV_041732 [Vitis vinifera]
Length = 781
Score = 121 bits (303), Expect(2) = 3e-32
Identities = 57/94 (60%), Positives = 69/94 (73%)
Frame = -2
Query: 773 FTISSEICSPDSFMITPLPLPGFPYTGEFDCLQKLSSWLSFVDPSHYTQNHGGEKASVYK 594
F + EICSPDSF ITP + GF Y GE +CLQ+L+ L+ V PSHYTQNH G KA VYK
Sbjct: 76 FRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLANVVPSHYTQNHSGGKACVYK 135
Query: 593 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 492
L DYD VL+CLK +G+E +EIPW T NVV ++S
Sbjct: 136 LGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLS 169
Score = 44.7 bits (104), Expect(2) = 3e-32
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -3
Query: 490 SFVANRWIPCVPEHLPDNDVDKLLKFLPKGNCNCLLLYE 374
SFV +W+PC PEHL D+ VD+L+ LPK + LL ++
Sbjct: 171 SFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQ 209
>ref|NP_196398.2| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
gi|332003824|gb|AED91207.1| SNF2 and helicase
domain-containing protein [Arabidopsis thaliana]
Length = 1190
Score = 138 bits (347), Expect = 3e-30
Identities = 65/89 (73%), Positives = 74/89 (83%)
Frame = -2
Query: 269 IKAILDFVAKVTHKVLLSGTPSLSRPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQG 90
IK +LD KV H +LLSGTPS+SRP+DI HQI+MLWPGLLG KYEFAKTYCE +V+G
Sbjct: 339 IKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEVGLVRG 398
Query: 89 AQGKVFQDFSKGVRLEELNVLLTQTVMIR 3
QGK+FQDFSKG RL ELN+LL QTVMIR
Sbjct: 399 IQGKIFQDFSKGTRLLELNILLNQTVMIR 427
Score = 100 bits (250), Expect(2) = 2e-25
Identities = 49/94 (52%), Positives = 63/94 (67%)
Frame = -2
Query: 773 FTISSEICSPDSFMITPLPLPGFPYTGEFDCLQKLSSWLSFVDPSHYTQNHGGEKASVYK 594
F + EICSPDSF +TP+ L GF E +CL++L LS P HYTQN G KA VYK
Sbjct: 75 FRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLRKILSDAIPLHYTQNDDGGKAGVYK 134
Query: 593 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 492
+RDY+ V CLK+ + VE + +PW+TL VV K+S
Sbjct: 135 IRDYNKVSGCLKRSKSVEVEGVPWKTLAVVEKLS 168
Score = 42.0 bits (97), Expect(2) = 2e-25
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = -3
Query: 493 QSFVANRWIPCVPEHLPDNDVDKLLKFLPKGNCNCLLLYE 374
QS+++ +W PC+PEH + V++L++ LP+ N LL ++
Sbjct: 169 QSYISGKWQPCLPEHYTEEKVEQLIETLPRKLVNALLPFQ 208
Score = 75.9 bits (185), Expect = 2e-11
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = -1
Query: 405 KAIAIACCFMNEGSILVVCPAILRFSWAEELERWLPILSPTGIHLDKSH 259
+AIAIA CF++EGSILVVCPA+LRF+WAEELERWLP P+ +HL H
Sbjct: 235 QAIAIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCLPSDVHLVFGH 283
>ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297319162|gb|EFH49584.1| SNF2 domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
Length = 1194
Score = 135 bits (340), Expect = 2e-29
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = -2
Query: 269 IKAILDFVAKVTHKVLLSGTPSLSRPYDICHQIDMLWPGLLGTSKYEFAKTYCEAKIVQG 90
IK +L+ KV H VLLSGTPS+SRP+DI HQI++LWPGLLG KYEFAKTYCE +V+G
Sbjct: 339 IKTVLNVAEKVKHIVLLSGTPSISRPFDIFHQINILWPGLLGKEKYEFAKTYCEVGLVRG 398
Query: 89 AQGKVFQDFSKGVRLEELNVLLTQTVMIR 3
QGK+FQDFSKG RL ELN+LL QTVMIR
Sbjct: 399 MQGKIFQDFSKGTRLLELNILLNQTVMIR 427
Score = 106 bits (264), Expect(2) = 2e-27
Identities = 52/94 (55%), Positives = 65/94 (69%)
Frame = -2
Query: 773 FTISSEICSPDSFMITPLPLPGFPYTGEFDCLQKLSSWLSFVDPSHYTQNHGGEKASVYK 594
F + EICSPDSF +TP+ L GF E +CL++L LS P HYTQN G KA VYK
Sbjct: 75 FRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLREILSEAIPLHYTQNDDGGKAGVYK 134
Query: 593 LRDYDMVLKCLKKVEGVEPQEIPWRTLNVVHKVS 492
+RDY+MV CLK+ + VE +EIPW+TL VV K+S
Sbjct: 135 IRDYNMVSGCLKRSKSVEVEEIPWKTLAVVEKLS 168
Score = 43.5 bits (101), Expect(2) = 2e-27
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -3
Query: 493 QSFVANRWIPCVPEHLPDNDVDKLLKFLPKGNCNCLLLYE 374
QSF++ +W PC+PEH + V+KL++ LP+ + LL ++
Sbjct: 169 QSFISGKWQPCIPEHYTEEKVEKLIETLPRKLVSALLPFQ 208
Score = 78.2 bits (191), Expect = 4e-12
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = -1
Query: 405 KAIAIACCFMNEGSILVVCPAILRFSWAEELERWLPILSPTGIHLDKSH 259
+AIAIA CF++EGSILVVCPA+LRFSWAEELERWLP P+ IHL H
Sbjct: 235 QAIAIAGCFISEGSILVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGH 283