BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024388
         (1001 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   123   1e-39
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   117   4e-38
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   116   6e-38
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   117   2e-37
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   116   3e-37

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  123 bits (308), Expect(2) = 1e-39
 Identities = 60/83 (72%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
 Frame = +3

Query: 756  LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTQDVTSADLQ 935
            ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQC+YCSVEF L  +C  DQT DVTS DL 
Sbjct: 67   IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLY 126

Query: 936  STDPTVVATR-SSSSGYDASENR 1001
            S+D TVV    S SSGYD+SE R
Sbjct: 127  SSDHTVVPVDFSDSSGYDSSEQR 149



 Score = 67.4 bits (163), Expect(2) = 1e-39
 Identities = 34/41 (82%), Positives = 38/41 (92%)
 Frame = +2

Query: 638 WLKFELRKTDASMANALRRVMLAEVQTIAIDLVEIEVNSTV 760
           + KFELR TDASMANALRRVM+AEV T+AIDLVEIEVNS+V
Sbjct: 21  YCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 61


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  117 bits (293), Expect(2) = 4e-38
 Identities = 56/83 (67%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
 Frame = +3

Query: 756  LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTQDVTSADLQ 935
            ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF L  +C  D+T DVTS DL 
Sbjct: 67   IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLI 126

Query: 936  STDPTVVATR-SSSSGYDASENR 1001
            S+D TVV    S SSGYD+++ +
Sbjct: 127  SSDHTVVPVDFSDSSGYDSADKK 149



 Score = 68.2 bits (165), Expect(2) = 4e-38
 Identities = 34/41 (82%), Positives = 39/41 (95%)
 Frame = +2

Query: 638 WLKFELRKTDASMANALRRVMLAEVQTIAIDLVEIEVNSTV 760
           + KFELR+TDASMANALRRVM+AEV T+AIDLVEIEVNS+V
Sbjct: 21  YAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 61


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  116 bits (291), Expect(2) = 6e-38
 Identities = 56/83 (67%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
 Frame = +3

Query: 756  LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTQDVTSADLQ 935
            ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF L  +C  D+T DVTS DL 
Sbjct: 67   IAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLI 126

Query: 936  STDPTVVATR-SSSSGYDASENR 1001
            S+D TVV    S SSGYD+++ +
Sbjct: 127  SSDHTVVPVDFSDSSGYDSADKK 149



 Score = 68.2 bits (165), Expect(2) = 6e-38
 Identities = 34/41 (82%), Positives = 39/41 (95%)
 Frame = +2

Query: 638 WLKFELRKTDASMANALRRVMLAEVQTIAIDLVEIEVNSTV 760
           + KFELR+TDASMANALRRVM+AEV T+AIDLVEIEVNS+V
Sbjct: 21  YAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSV 61


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi|297329735|gb|EFH60154.1|
            RBP36A [Arabidopsis lyrata subsp. lyrata]
          Length = 319

 Score =  117 bits (294), Expect(2) = 2e-37
 Identities = 58/84 (69%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
 Frame = +3

Query: 756  LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTQDVTSADLQ 935
            ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF+LS +C  DQT DVTS DL 
Sbjct: 67   IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSRDLY 126

Query: 936  STDPTV--VATRSSSSGYDASENR 1001
            S DPTV  V     SS  D+SE +
Sbjct: 127  SADPTVTPVDFTIDSSASDSSEQK 150



 Score = 65.5 bits (158), Expect(2) = 2e-37
 Identities = 32/41 (78%), Positives = 38/41 (92%)
 Frame = +2

Query: 638 WLKFELRKTDASMANALRRVMLAEVQTIAIDLVEIEVNSTV 760
           + KFELR+TD SMANALRRVM++EV T+AIDLVEIEVNS+V
Sbjct: 21  YAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSV 61


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  116 bits (291), Expect(2) = 3e-37
 Identities = 57/83 (68%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +3

Query: 756  LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTQDVTSADLQ 935
            ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF L V+C  DQT DVTS DL 
Sbjct: 68   IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLY 127

Query: 936  STDPTVVATR-SSSSGYDASENR 1001
            S+DPTV     S  S  D+  NR
Sbjct: 128  SSDPTVSPVDFSDPSATDSDNNR 150



 Score = 65.9 bits (159), Expect(2) = 3e-37
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +2

Query: 638 WLKFELRKTDASMANALRRVMLAEVQTIAIDLVEIEVNSTV 760
           + KFELR TDAS+ANALRRVM+AEV T+AIDLVEIEVNS+V
Sbjct: 22  YAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSV 62