BLASTX nr result
ID: Coptis25_contig00024375
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00024375
(624 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI39452.3| unnamed protein product [Vitis vinifera] 261 1e-67
ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containi... 261 1e-67
emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera] 261 1e-67
ref|XP_002511627.1| pentatricopeptide repeat-containing protein,... 259 3e-67
ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|2... 255 5e-66
>emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 261 bits (666), Expect = 1e-67
Identities = 123/192 (64%), Positives = 151/192 (78%)
Frame = -1
Query: 624 IKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILI 445
IKE+LE M+G G F PDTCT NTL+ AHC + ++EA+ VF KM EL VQPDSA+YS+L+
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 421
Query: 444 RNLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQ 265
R+L Q+G+ RAEE FDEL+E EIL+HD GC P+VAAYNPMFEYLC+ GKTKKAERVFRQ
Sbjct: 422 RSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQ 481
Query: 264 LLKRGRQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEGFFRKK*P 85
L+KRG QDP +++TLI+GHC+EGT EAGFDLLV MLRRDFVPD E Y +I+G +K P
Sbjct: 482 LMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDP 541
Query: 84 IFPQYFREDNIK 49
+ E +K
Sbjct: 542 VLAHKSLEKMLK 553
Score = 73.6 bits (179), Expect = 3e-11
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 32/207 (15%)
Frame = -1
Query: 564 FNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERAEELFDELS 385
FN+L+ ++ E+ KVF M+E+GV P +++ L+ + ++G A++LFDE+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227
Query: 384 EN----------EILVH--------DEG-----------CVPVVAAYNPMFEYLCAKGKT 292
+ IL+ DEG C P V YN + + LC GK
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287
Query: 291 KKAERVFRQLLKRG---RQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYE 121
K A V + ++K+ + + + TLI G+C + LL M+ R P+ Y
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347
Query: 120 SLIEGFFRKK*PIFPQYFREDNIKECL 40
+LI+G + + D IKE L
Sbjct: 348 TLIQGLCEAQ--------KLDKIKEIL 366
Score = 63.9 bits (154), Expect = 2e-08
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Frame = -1
Query: 621 KEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIR 442
K++ +EM+ TPDT TFN L+ C + +DE + F +M PD +Y+ L+
Sbjct: 220 KQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVD 279
Query: 441 NLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQL 262
L + G+++ A + + + P V Y + C K +A + ++
Sbjct: 280 GLCRAGKVKIAHNVVKGMVKK-----SPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEM 334
Query: 261 LKRG-RQDPLAFRTLIMGHCKEGTFEAGFDLLVFML-RRDFVPDVEIYESLIE 109
+ RG + + + + TLI G C+ + ++L M+ F+PD +LI+
Sbjct: 335 VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIK 387
>ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 261 bits (666), Expect = 1e-67
Identities = 123/192 (64%), Positives = 151/192 (78%)
Frame = -1
Query: 624 IKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILI 445
IKE+LE M+G G F PDTCT NTL+ AHC + ++EA+ VF KM EL VQPDSA+YS+L+
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 421
Query: 444 RNLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQ 265
R+L Q+G+ RAEE FDEL+E EIL+HD GC P+VAAYNPMFEYLC+ GKTKKAERVFRQ
Sbjct: 422 RSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQ 481
Query: 264 LLKRGRQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEGFFRKK*P 85
L+KRG QDP +++TLI+GHC+EGT EAGFDLLV MLRRDFVPD E Y +I+G +K P
Sbjct: 482 LMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDP 541
Query: 84 IFPQYFREDNIK 49
+ E +K
Sbjct: 542 VLAHKSLEKMLK 553
Score = 73.6 bits (179), Expect = 3e-11
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 32/207 (15%)
Frame = -1
Query: 564 FNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERAEELFDELS 385
FN+L+ ++ E+ KVF M+E+GV P +++ L+ + ++G A++LFDE+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227
Query: 384 EN----------EILVH--------DEG-----------CVPVVAAYNPMFEYLCAKGKT 292
+ IL+ DEG C P V YN + + LC GK
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287
Query: 291 KKAERVFRQLLKRG---RQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYE 121
K A V + ++K+ + + + TLI G+C + LL M+ R P+ Y
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347
Query: 120 SLIEGFFRKK*PIFPQYFREDNIKECL 40
+LI+G + + D IKE L
Sbjct: 348 TLIQGLCEAQ--------KLDKIKEIL 366
Score = 63.9 bits (154), Expect = 2e-08
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Frame = -1
Query: 621 KEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIR 442
K++ +EM+ TPDT TFN L+ C + +DE + F +M PD +Y+ L+
Sbjct: 220 KQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVD 279
Query: 441 NLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQL 262
L + G+++ A + + + P V Y + C K +A + ++
Sbjct: 280 GLCRAGKVKIAHNVVKGMVKK-----SPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEM 334
Query: 261 LKRG-RQDPLAFRTLIMGHCKEGTFEAGFDLLVFML-RRDFVPDVEIYESLIE 109
+ RG + + + + TLI G C+ + ++L M+ F+PD +LI+
Sbjct: 335 VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIK 387
>emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 261 bits (666), Expect = 1e-67
Identities = 123/192 (64%), Positives = 151/192 (78%)
Frame = -1
Query: 624 IKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILI 445
IKE+LE M+G G F PDTCT NTL+ AHC + ++EA+ VF KM EL VQPDSA+YS+L+
Sbjct: 433 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 492
Query: 444 RNLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQ 265
R+L Q+G+ RAEE FDEL+E EIL+HD GC P+VAAYNPMFEYLC+ GKTKKAERVFRQ
Sbjct: 493 RSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQ 552
Query: 264 LLKRGRQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEGFFRKK*P 85
L+KRG QDP +++TLI+GHC+EGT EAGFDLLV MLRRDFVPD E Y +I+G +K P
Sbjct: 553 LMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDP 612
Query: 84 IFPQYFREDNIK 49
+ E +K
Sbjct: 613 VLAHKSLEKMLK 624
Score = 68.9 bits (167), Expect = 7e-10
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 32/192 (16%)
Frame = -1
Query: 519 EAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERAEELFDELSEN----------EIL 370
E+ KVF M+E+GV P +++ L+ + ++G A++LFDE+ + IL
Sbjct: 254 ESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNIL 313
Query: 369 VH--------DEG-----------CVPVVAAYNPMFEYLCAKGKTKKAERVFRQLLKRG- 250
+ DEG C P V YN + + LC GK K A V + ++K+
Sbjct: 314 IRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSP 373
Query: 249 --RQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEGFFRKK*PIFP 76
+ + + TLI G+C + LL M+ R P+ Y +LI+G +
Sbjct: 374 NLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQ----- 428
Query: 75 QYFREDNIKECL 40
+ D IKE L
Sbjct: 429 ---KLDKIKEIL 437
Score = 63.9 bits (154), Expect = 2e-08
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Frame = -1
Query: 621 KEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIR 442
K++ +EM+ TPDT TFN L+ C + +DE + F +M PD +Y+ L+
Sbjct: 291 KQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVD 350
Query: 441 NLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQL 262
L + G+++ A + + + P V Y + C K +A + ++
Sbjct: 351 GLCRAGKVKIAHNVVKGMVKK-----SPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEM 405
Query: 261 LKRG-RQDPLAFRTLIMGHCKEGTFEAGFDLLVFML-RRDFVPDVEIYESLIE 109
+ RG + + + + TLI G C+ + ++L M+ F+PD +LI+
Sbjct: 406 VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIK 458
>ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548807|gb|EEF50296.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1163
Score = 259 bits (662), Expect = 3e-67
Identities = 123/192 (64%), Positives = 151/192 (78%)
Frame = -1
Query: 624 IKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILI 445
IK++ E +GGG F PDTCT NTL+NAHCN N+++A +VF KM L V+PDSA+YS+LI
Sbjct: 353 IKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLI 412
Query: 444 RNLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQ 265
RNL Q+G ERAE+LFDELSE EIL+ D+GC P+VAAY MFE+LC GKT KAERVFRQ
Sbjct: 413 RNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQ 472
Query: 264 LLKRGRQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEGFFRKK*P 85
L+KRG QDPL+F+ LI GHC+EGTFEAG++LLV MLRRDFVPD+E Y+SLI+G +K P
Sbjct: 473 LMKRGTQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEP 532
Query: 84 IFPQYFREDNIK 49
+ E IK
Sbjct: 533 LVAYQTLEKMIK 544
Score = 65.9 bits (159), Expect = 6e-09
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Frame = -1
Query: 621 KEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIR 442
+ V +EM+ TPDT TFN L+ C + +DE ++ F +M PD +Y+ L+
Sbjct: 211 QSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVD 270
Query: 441 NLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQL 262
L + G++ A + N ++ P V Y + C K + +A VF ++
Sbjct: 271 GLCRAGKVNIAHNVV-----NGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEM 325
Query: 261 LKRG-RQDPLAFRTLIMGHCK 202
+ +G + + + + TLI G C+
Sbjct: 326 VSKGLKPNEITYNTLIKGLCE 346
Score = 63.9 bits (154), Expect = 2e-08
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Frame = -1
Query: 582 TPDTCTFNTLLNAHCNVNNMDEAWKVFMKMREL-GVQPDSASYSILIRNLHQKGEIERAE 406
+P TFN+LL + A VF +M GV PD+ +++ILIR + ++
Sbjct: 188 SPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGF 247
Query: 405 ELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQLLKRGRQ---DPL 235
F E+S + C P + YN + + LC GK A V ++K+ D +
Sbjct: 248 RFFKEMSRFK-------CDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVV 300
Query: 234 AFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEG 106
+ TL+ G+C + + + M+ + P+ Y +LI+G
Sbjct: 301 TYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKG 343
>ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|222835144|gb|EEE73579.1|
predicted protein [Populus trichocarpa]
Length = 664
Score = 255 bits (651), Expect = 5e-66
Identities = 118/181 (65%), Positives = 149/181 (82%)
Frame = -1
Query: 624 IKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILI 445
IKE+L +GG F PDTCT+NTL+NA C+ N DEA K+F KM+EL VQPDSA+YS+LI
Sbjct: 294 IKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLI 353
Query: 444 RNLHQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQ 265
RNL Q+G+ ERAE+LFD+LS+ +IL+ D+GC P+VAAYNP+F++LC GKT KAERVFRQ
Sbjct: 354 RNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQ 413
Query: 264 LLKRGRQDPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYESLIEGFFRKK*P 85
L+K+G QDP +++TLI+GHCKEGTFEAG+ LL+FMLRRD+VPD E Y LI GF +K P
Sbjct: 414 LMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEP 473
Query: 84 I 82
I
Sbjct: 474 I 474
Score = 74.3 bits (181), Expect = 2e-11
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
Frame = -1
Query: 615 VLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNL 436
V +EM G TPDT TFN L+ C + +DE ++ F +M +PD +Y+ L+ L
Sbjct: 154 VFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGL 213
Query: 435 HQKGEIERAEELFDELSENEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQLLK 256
+ G++ A + + + + P V Y + C K + +A VF +++
Sbjct: 214 CRAGKVRIAHNVVKGMVKKM-----KDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVS 268
Query: 255 RG-RQDPLAFRTLIMGHCKEGTFEAGFDLLVFML-RRDFVPDVEIYESLI 112
RG + + + + TLI G C+ F+ ++L + R FVPD Y +L+
Sbjct: 269 RGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLM 318
Score = 67.4 bits (163), Expect = 2e-09
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Frame = -1
Query: 561 NTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERAEELFDELSE 382
NTLL ++ N +EA K+F M+ GV P +++ L+ L ++G A +FDE+
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160
Query: 381 N----------EILVH--------DEG-----------CVPVVAAYNPMFEYLCAKGKTK 289
IL+ DEG C P V YN + + LC GK +
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220
Query: 288 KAERVFRQLLKRGRQ---DPLAFRTLIMGHCKEGTFEAGFDLLVFMLRRDFVPDVEIYES 118
A V + ++K+ + D + + TL+ G+C + + + M+ R P+ Y +
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280
Query: 117 LIEG 106
LI+G
Sbjct: 281 LIKG 284