BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024357
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             276   2e-72
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             271   1e-70
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                267   2e-69
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   251   9e-65
emb|CAN83420.1| hypothetical protein VITISV_034225 [Vitis vinifera]   240   2e-61

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  276 bits (707), Expect = 2e-72
 Identities = 132/226 (58%), Positives = 171/226 (75%)
 Frame = -1

Query: 678 GTYCYTRMPFGLKNAGATFQHLGEKMFESKIRRGIEVYIDDMVEKSMSEEEHLEGLRETF 499
           G YCY  MPFGLKNAGAT+Q L  KMF + + + +EVYIDDM+ KS+ +E+H++ L E F
Sbjct: 137 GIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECF 196

Query: 498 GILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSLIEMPSPQNVKEVQRLA 319
           GIL KY +KLNP KCTFGV +G+FLGYIVT RGIEAN  QI + + MPSP+N KEVQRL 
Sbjct: 197 GILNKYQMKLNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRLT 256

Query: 318 GRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQELKGYLGKAPLLSRPEEGE 139
           GR+AALNRFI++S+DK  P Y++L+    FLW  +CEEAF +LK YL   P+LS+PE  E
Sbjct: 257 GRIAALNRFISRSTDKSLPFYQILKGNKGFLWDEKCEEAFGQLKAYLTTPPILSKPEVDE 316

Query: 138 KLYLYLGPTEYAVSLVLIRLVDRVKKPVYFQSKTLLDPETRYSRIE 1
           KLYLY+  + +AVS VL+R     +KP+Y+ SK++ DPETRY+ +E
Sbjct: 317 KLYLYVSVSNHAVSGVLVREDRGEQKPIYYVSKSMTDPETRYTMME 362


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  271 bits (692), Expect = 1e-70
 Identities = 127/226 (56%), Positives = 171/226 (75%)
 Frame = -1

Query: 678  GTYCYTRMPFGLKNAGATFQHLGEKMFESKIRRGIEVYIDDMVEKSMSEEEHLEGLRETF 499
            GTYCY  M FGLKNAGAT+Q    KM   +I R +EVYIDDM+ KS+  E+H+E L + F
Sbjct: 940  GTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCF 999

Query: 498  GILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSLIEMPSPQNVKEVQRLA 319
             +L  Y +KLNP KCTFGVT+G+FLGY+VT RGIEANP+QIR+++E+PSP+N +EVQRL 
Sbjct: 1000 DVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLT 1059

Query: 318  GRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQELKGYLGKAPLLSRPEEGE 139
            GR+AALNRFI++S+DKC P Y LL++   F W  + EEAF++LK YL   P+L +PE GE
Sbjct: 1060 GRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGE 1119

Query: 138  KLYLYLGPTEYAVSLVLIRLVDRVKKPVYFQSKTLLDPETRYSRIE 1
             LYLY+  +++AVS VL+R     ++P+++ SK+L++ ETRY  IE
Sbjct: 1120 TLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIE 1165


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  267 bits (682), Expect = 2e-69
 Identities = 129/226 (57%), Positives = 169/226 (74%)
 Frame = -1

Query: 678 GTYCYTRMPFGLKNAGATFQHLGEKMFESKIRRGIEVYIDDMVEKSMSEEEHLEGLRETF 499
           G Y Y  MPFGLKNAG+T+Q +  +MF+S++ R +E YIDDMV KS    +HL+ L ETF
Sbjct: 209 GNYHYRVMPFGLKNAGSTYQRMVTRMFDSQLGRTMEAYIDDMVIKSKKVGDHLKDLHETF 268

Query: 498 GILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSLIEMPSPQNVKEVQRLA 319
            +LRK+ L+LN  KC+FGV +GKFLGY++THRGIE NP+QI++++E+  P+N KEVQ+LA
Sbjct: 269 SVLRKHKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQKLA 328

Query: 318 GRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQELKGYLGKAPLLSRPEEGE 139
           G  A LNRFI++S+D+CRP YRLL K  DFLWT EC  AF++L+ YL    +LSRPE+ E
Sbjct: 329 GMFAVLNRFISRSADRCRPFYRLLHKWKDFLWTDECNLAFEDLRQYLANPLILSRPEKKE 388

Query: 138 KLYLYLGPTEYAVSLVLIRLVDRVKKPVYFQSKTLLDPETRYSRIE 1
            LY YL    YAVSLVLIR  D V+KP+Y+ SK+L + E RY  +E
Sbjct: 389 VLYAYLAVMNYAVSLVLIRNDDGVQKPIYYISKSLQEAERRYLPLE 434


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  251 bits (641), Expect = 9e-65
 Identities = 120/210 (57%), Positives = 156/210 (74%)
 Frame = -1

Query: 678  GTYCYTRMPFGLKNAGATFQHLGEKMFESKIRRGIEVYIDDMVEKSMSEEEHLEGLRETF 499
            G YCY  MPFGL+NAGAT+  L  KMF   + + +EVYIDDM+ KS+ +E+H++ L E F
Sbjct: 580  GIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECF 639

Query: 498  GILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSLIEMPSPQNVKEVQRLA 319
             IL +Y +KLNP KCTFGV +G+FLGYIVT RGIEANP QI + + MPSP+N KEVQRL 
Sbjct: 640  AILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLT 699

Query: 318  GRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQELKGYLGKAPLLSRPEEGE 139
            GR+AALNRFI++S+DK  P Y++L+   +FLW  +CEEAF +LK YL   P+L +PE  E
Sbjct: 700  GRIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDE 759

Query: 138  KLYLYLGPTEYAVSLVLIRLVDRVKKPVYF 49
            KLYLY+  + +AVS VLIR     +KP+Y+
Sbjct: 760  KLYLYVSVSNHAVSGVLIREDRGEQKPIYY 789


>emb|CAN83420.1| hypothetical protein VITISV_034225 [Vitis vinifera]
          Length = 955

 Score =  240 bits (612), Expect = 2e-61
 Identities = 116/227 (51%), Positives = 162/227 (71%), Gaps = 1/227 (0%)
 Frame = -1

Query: 678 GTYCYTRMPFGLKNAGATFQHLGEKMFESKIRRGIEVYIDDMVEKSMSEEEHLEGLRETF 499
           G YCY  MPFGLKNAGAT+Q L  K+F+  I R +EVYIDD+V KS + E+H+  L+E F
Sbjct: 137 GLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGRSVEVYIDDIVVKSKTREQHILHLQEVF 196

Query: 498 GILRKYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPEQIRSLIEMPSPQNVKEVQRLA 319
            +LRKY++KLNP KC FGV+ GKFLG++V+ RGIE +P+Q+++++E P P+N KE+QRL 
Sbjct: 197 YLLRKYDMKLNPSKCAFGVSAGKFLGFMVSQRGIEVSPDQVKAVMETPPPRNKKELQRLT 256

Query: 318 GRVAALNRFIAKSSDKCRPLYRLLRKTPDFLWTAECEEAFQELKGYLGKAPLLSRPEEGE 139
           G++ AL RFIA+ +D+ RP +  +RK     WT  C+ A + +K  L   P+LS P   E
Sbjct: 257 GKLVALGRFIARFTDELRPFFLAIRKAGTQGWTDNCQNALERIKHCLMHPPILSSPMPKE 316

Query: 138 KLYLYLGPTEYAVSLVLIRLVD-RVKKPVYFQSKTLLDPETRYSRIE 1
           KLY+YL  +E+A+S VL R    + +KPVY+ S+ L D ETRYS++E
Sbjct: 317 KLYMYLAVSEWAISAVLFRCPSPKEQKPVYYVSRALADVETRYSKME 363