BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024307
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-30
ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|2...   126   2e-27
ref|XP_003609027.1| Pentatricopeptide repeat-containing protein ...   118   6e-25
ref|XP_002512435.1| pentatricopeptide repeat-containing protein,...   117   1e-24
ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containi...   115   3e-24

>ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
           gi|449524964|ref|XP_004169491.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  137 bits (344), Expect = 1e-30
 Identities = 64/88 (72%), Positives = 77/88 (87%)
 Frame = -2

Query: 265 AGDYRYRLSVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGK 86
           AGDYRY+LSV+SCNPLLSALVK+NE    E VYKEM RR++  +L +FNT+ING CKVGK
Sbjct: 186 AGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGK 245

Query: 85  LSKAGDLVEDIKVWGVFPNVVTYNTLID 2
           L+KAGD+V+D+KVWG +PNVVTYNTLID
Sbjct: 246 LNKAGDVVDDMKVWGFWPNVVTYNTLID 273



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/79 (34%), Positives = 51/79 (64%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           +VV+ N L++ L  + ++  A+ +  EM    ++ ++ ++N +INGYCK   L +A +L 
Sbjct: 337 TVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396

Query: 61  EDIKVWGVFPNVVTYNTLI 5
           ++I   G+ PNV+T+NTL+
Sbjct: 397 DNIGKQGLTPNVITFNTLL 415



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/79 (32%), Positives = 48/79 (60%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           +V++ N L++   KK  +E A  ++  + ++ +  ++ +FNT+++GYCK GK+ +A  L 
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQ 431

Query: 61  EDIKVWGVFPNVVTYNTLI 5
           + +   G  PN  TYN LI
Sbjct: 432 KVMLEKGFLPNASTYNCLI 450


>ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|222871651|gb|EEF08782.1|
           predicted protein [Populus trichocarpa]
          Length = 529

 Score =  126 bits (316), Expect = 2e-27
 Identities = 55/88 (62%), Positives = 77/88 (87%)
 Frame = -2

Query: 265 AGDYRYRLSVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGK 86
           AGDY ++LS++SCNPLLS LVK++E  + E VY+EM +R+++L++ SFN ++NG CKVGK
Sbjct: 111 AGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGK 170

Query: 85  LSKAGDLVEDIKVWGVFPNVVTYNTLID 2
           L++AGD++ED+KVWGV PNV+TYNTLID
Sbjct: 171 LNRAGDVIEDMKVWGVSPNVITYNTLID 198



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/79 (32%), Positives = 50/79 (63%)
 Frame = -2

Query: 238 VVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLVE 59
           V + N L++ L +K +++ A  +  EM  +++  D+ ++N +I+  CK G+  KA  L++
Sbjct: 368 VSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLD 427

Query: 58  DIKVWGVFPNVVTYNTLID 2
           ++   G+ P+ VTYNTL+D
Sbjct: 428 EMFEKGLNPSHVTYNTLMD 446


>ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510082|gb|AES91224.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  118 bits (295), Expect = 6e-25
 Identities = 54/88 (61%), Positives = 70/88 (79%)
 Frame = -2

Query: 265 AGDYRYRLSVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGK 86
           A DY ++LS+ SCNPLLSALVK+N+I + E VYKEM +RR+  +L +FN  ING C+ GK
Sbjct: 156 AKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGK 215

Query: 85  LSKAGDLVEDIKVWGVFPNVVTYNTLID 2
           L+KA D +ED+K WG+ PNVVTYNTL+D
Sbjct: 216 LNKAEDAIEDMKAWGISPNVVTYNTLVD 243



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/78 (34%), Positives = 49/78 (62%)
 Frame = -2

Query: 235 VSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLVED 56
           V+ N L+    K   +  A+  ++EM ++ ++ ++ ++N++ING C  GKL +A DL + 
Sbjct: 274 VTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDK 333

Query: 55  IKVWGVFPNVVTYNTLID 2
           +   G+ PN+VTYN LI+
Sbjct: 334 MVGLGLKPNIVTYNALIN 351



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/79 (32%), Positives = 48/79 (60%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           ++V+ N L++   KK  ++ A  V+ +++++ +  ++ +FNTMI+ YCK G + +   L 
Sbjct: 342 NIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLC 401

Query: 61  EDIKVWGVFPNVVTYNTLI 5
             +   G+ PNV TYN LI
Sbjct: 402 SSMLDEGILPNVSTYNCLI 420



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 23/80 (28%), Positives = 50/80 (62%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           ++V+ N L++ L    ++E A  ++ +M    ++ ++ ++N +ING+CK   + +A  + 
Sbjct: 307 NIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVF 366

Query: 61  EDIKVWGVFPNVVTYNTLID 2
           +D+    + PNV+T+NT+ID
Sbjct: 367 DDVSKQELVPNVITFNTMID 386


>ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548396|gb|EEF49887.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 546

 Score =  117 bits (293), Expect = 1e-24
 Identities = 58/88 (65%), Positives = 69/88 (78%)
 Frame = -2

Query: 265 AGDYRYRLSVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGK 86
           A DY  +LSV SCNPL+S LVK  EI + E VYKEM RRR++  L SFN +ING CKVGK
Sbjct: 119 ASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGK 178

Query: 85  LSKAGDLVEDIKVWGVFPNVVTYNTLID 2
           L+KAGD++ED+KV GV  NV+TYNTLID
Sbjct: 179 LNKAGDIIEDMKVRGVSANVITYNTLID 206



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/80 (32%), Positives = 48/80 (60%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           +VV+ N L++ L    ++  A  +  +M    ++ ++ + N ++NG+CK   + +AG+L 
Sbjct: 270 NVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELF 329

Query: 61  EDIKVWGVFPNVVTYNTLID 2
           +D+   G+ PNV TYN LID
Sbjct: 330 DDMPKQGITPNVTTYNILID 349



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/79 (32%), Positives = 51/79 (64%)
 Frame = -2

Query: 238 VVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLVE 59
           V + N L++ L +K ++E A  +  EM+ + ++ DL ++N +I+  C  G++ KA  L++
Sbjct: 376 VSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLD 435

Query: 58  DIKVWGVFPNVVTYNTLID 2
           ++   G+ P+ +TYNT+ID
Sbjct: 436 EMCRKGLKPSQLTYNTMID 454



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%)
 Frame = -2

Query: 247 RLSVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGD 68
           +  +++ N L+ +L  K E++ A  +  EM R+ ++    ++NTMI+GYCK G L  A +
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 67  LVEDIKVWGVFPNVVTYNTLI 5
           L   ++  G   NV TYN LI
Sbjct: 468 LRSQMEKVGRLANVATYNVLI 488


>ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  115 bits (289), Expect = 3e-24
 Identities = 55/86 (63%), Positives = 67/86 (77%)
 Frame = -2

Query: 259 DYRYRLSVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLS 80
           DY ++LS+ SCNPLLSALVK NE    + VYKEM +RR+Q +L +FN  ING CK GKL+
Sbjct: 158 DYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLN 217

Query: 79  KAGDLVEDIKVWGVFPNVVTYNTLID 2
           KA D++EDIK WG  PN+VTYNTLID
Sbjct: 218 KAEDVIEDIKAWGFSPNIVTYNTLID 243



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/80 (36%), Positives = 49/80 (61%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           +V + N L++ L +   +  A+ +  EM    ++ D+ ++N +I G+CK G+ SKA  L+
Sbjct: 412 NVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLL 471

Query: 61  EDIKVWGVFPNVVTYNTLID 2
            ++   GV PN VTYNTL+D
Sbjct: 472 GEMLNVGVKPNHVTYNTLMD 491



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/80 (30%), Positives = 49/80 (61%)
 Frame = -2

Query: 241 SVVSCNPLLSALVKKNEIENAEGVYKEMNRRRVQLDLFSFNTMINGYCKVGKLSKAGDLV 62
           ++V+ N L++ L    +++ A  ++ +M    ++ ++ +FN +ING+CK   + +A  L 
Sbjct: 307 NIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLF 366

Query: 61  EDIKVWGVFPNVVTYNTLID 2
           +DI    + PN +T+NT+ID
Sbjct: 367 DDIAEQDLVPNAITFNTMID 386