BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024306
         (213 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512435.1| pentatricopeptide repeat-containing protein,...   106   2e-21
ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containi...   105   3e-21
ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|2...   104   6e-21
ref|XP_003609027.1| Pentatricopeptide repeat-containing protein ...   100   2e-19
ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19

>ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548396|gb|EEF49887.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 546

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/71 (71%), Positives = 59/71 (83%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYNTLIDGYCKMGK GKMYKAD +LKEM +  I  NEVTFNILIDG+CKD+NV AAMK+F
Sbjct: 200 TYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVF 259

Query: 33  EELKNRKDSRP 1
            E+ NR+  +P
Sbjct: 260 AEM-NRQGVKP 269


>ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
           gi|449524964|ref|XP_004169491.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  105 bits (263), Expect = 3e-21
 Identities = 45/66 (68%), Positives = 58/66 (87%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYNTLIDGYCKMG+ GKMYKAD +LKEMV + +  N VTFN+LIDG+CKDEN+ AA+K+F
Sbjct: 267 TYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVF 326

Query: 33  EELKNR 16
           EE++++
Sbjct: 327 EEMQSQ 332



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/63 (46%), Positives = 44/63 (69%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYN+L++G C     GK+ +A VLL EM+SSN+  N +T+N LI+GYCK + +  A +LF
Sbjct: 340 TYNSLVNGLCN---EGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396

Query: 33  EEL 25
           + +
Sbjct: 397 DNI 399


>ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|222871651|gb|EEF08782.1|
           predicted protein [Populus trichocarpa]
          Length = 529

 Score =  104 bits (260), Expect = 6e-21
 Identities = 49/71 (69%), Positives = 59/71 (83%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYNTLIDGYCKMG+ GKMYKAD +LKEMV+  I  NEVT+NILIDG+CKDENV  AM++F
Sbjct: 192 TYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVF 251

Query: 33  EELKNRKDSRP 1
            E++ R+  RP
Sbjct: 252 GEMQ-RQGLRP 261



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/66 (42%), Positives = 43/66 (65%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYN LI+G C  GK  +   A  L  +MVSS++  N VT N+LI+G+CK++ V  A+ LF
Sbjct: 265 TYNILINGLCSDGKVDE---AVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLF 321

Query: 33  EELKNR 16
            +++ +
Sbjct: 322 NDMEKQ 327


>ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510082|gb|AES91224.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  100 bits (248), Expect = 2e-19
 Identities = 44/66 (66%), Positives = 54/66 (81%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYNTL+DGYCK G AGKMYKA+  +KEM+++ I  NEVTFN LIDG+CKDENV AA K F
Sbjct: 237 TYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAF 296

Query: 33  EELKNR 16
           EE++ +
Sbjct: 297 EEMQKQ 302


>ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 213 TYNTLIDGYCKMGKAGKMYKADVLLKEMVSSNIVANEVTFNILIDGYCKDENVGAAMKLF 34
           TYNT+IDGYCK G+AG+MY  D LLKEMV + I  NEVTFN+L++GYCKD N  AA+++F
Sbjct: 222 TYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVF 281

Query: 33  EELKNR 16
           EE+K +
Sbjct: 282 EEMKQQ 287