BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024273
         (722 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm...    94   2e-17
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    93   5e-17
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2...    92   1e-16
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    91   2e-16
ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    90   5e-16

>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
           gi|223525141|gb|EEF27869.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 383

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 19/244 (7%)
 Frame = -3

Query: 720 FDPVSKVFKVIRI-LINLVDNLRNE--SIQEETAAEVYTLGTDEWRSLGKVPFYFPRYSN 550
           FDPV K +KV+++  I   +N   E   +   +  ++ T+G+  WRSLG+ P+Y      
Sbjct: 155 FDPVRKKYKVLKVSYIRRTNNTAGERYGLSLRSEVQILTVGSPSWRSLGETPYY------ 208

Query: 549 NNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEEVILFKLDIEEFQKLPLPPGLGSAAN 370
                PI  ++ S + VNG LHW+          ++I F L+ E+F+++PLP G      
Sbjct: 209 -----PI--HSPSQVYVNGRLHWVNWPVRYRPGRKLISFDLEDEKFREVPLP-GSDGIKW 260

Query: 369 SNRFLVELGECLCVVHVINAEYIRIWVMKNYGVESSWTKEYVIRI-------------TQ 229
            +  LV + +CL      N     +WVMK+YG++ SW KE+ I +              +
Sbjct: 261 GDYMLVVIRDCLSAAVYRNYGSFEVWVMKDYGLKESWIKEFSIGVYLPKGLEQKIDPSFR 320

Query: 228 MDRDYRLDPIQPVQLMKNGEMLLLCSDRRNSYLAYYNTKTKTFRYSDIGSL---WRILPH 58
           + + YR    + + ++KNGE+LL    R    L  Y  +  TF+   +  +   +    H
Sbjct: 321 VSKFYRRAFTRILCVLKNGEILLEYGRRA---LVSYEARFGTFKDITVPGMPNWFEAFAH 377

Query: 57  LGSL 46
           LG++
Sbjct: 378 LGNI 381


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 93.2 bits (230), Expect = 5e-17
 Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 22/247 (8%)
 Frame = -3

Query: 720 FDPVSKVFKVIRILINLVDNLR----NESIQEETAAEVYTLGTDEWRSLGKVPFYFPRYS 553
           F+P +  +KVIRI+     + R       I   +  ++ TLG   WRSLGKV +   R  
Sbjct: 172 FNPKTNEYKVIRIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVR-- 229

Query: 552 NNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEEVILFKLDIEEFQKLPLPPGLGSAA 373
                        S+ LVNG LHW+     +  A  ++ F L  E+F+++P  P  G   
Sbjct: 230 -----------RASETLVNGRLHWVSRPCRNKPARRLVSFDLTDEQFREVP-KPDCGGLN 277

Query: 372 NSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVESSWTKEYVIRITQMDRDYRLDPIQP 193
             +  L  L  CL V    N   + IWVMK Y V+ SW KEY I    M +  + + ++P
Sbjct: 278 RCDYHLAVLRGCLSVAVYCNYGRLEIWVMKEYNVKESWVKEYNIG-AYMPKGLKQNLVRP 336

Query: 192 VQL---------------MKNGEMLLLCSDRRNSYLAYYNTKTKTFRYSDIGSL---WRI 67
           +++               +KNGE+LL   + +N  L  Y+ K   F+  D+      ++ 
Sbjct: 337 LKIWKNASNGRAVRALCVLKNGEILL---EYKNRALVSYDPKKGKFKDIDLQGTPKWFQT 393

Query: 66  LPHLGSL 46
           + H+GSL
Sbjct: 394 VVHVGSL 400


>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
           predicted protein [Populus trichocarpa]
          Length = 477

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 5/205 (2%)
 Frame = -3

Query: 627 AEVYTLGTDEWRSLGKVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAE 448
           AE++TLG   W S+           +   +SP  D    +  V G LHWI   ++   +E
Sbjct: 201 AEIHTLGKGTWTSI-----------HGGALSPPIDMRCHNAFVGGCLHWI--VNDPSKSE 247

Query: 447 EVILFKLDIEEFQKLPLPPGLG---SAANSNRFLVELGECLCVVHVINAEYIRIWVMKNY 277
            +   +   E FQ +  PP LG        +  L  LG CL        +   IWVMK Y
Sbjct: 248 FIYCLEFGRELFQPVAAPPHLGPNDKDRTGDMMLGVLGGCLYFFDYPLGDSFDIWVMKQY 307

Query: 276 GVESSWTKEYVIRITQMDRDYRLDPIQPVQLMKNGEMLLLCSDRRNSYLAYYNTKTKTFR 97
           GV+ SWTKE++++    D  +  D  +P+ L+ NGE+L+     ++  +  YN + ++FR
Sbjct: 308 GVQESWTKEFILKNPSTDIIWYWDLYRPISLLSNGEILM---SHKSKAMVSYNPEDRSFR 364

Query: 96  YSDIGSL--WRILPHLGSLISPRKM 28
           +  I  +  +   P++ S +SPR++
Sbjct: 365 FLKIYGIQNFEANPYVPSFLSPREI 389


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 74/246 (30%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
 Frame = -3

Query: 720 FDPVSKVFKVIRILINLVDN----LRNESIQEETAAEVYTLGTDEWRSLGKVPFYFPRYS 553
           F+P +K +KVIRI+     +         I   +  ++ TLG  EWRSLGKV +   R  
Sbjct: 173 FNPKTKEYKVIRIVYYRNGHGGYPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLVR-- 230

Query: 552 NNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEEVILFKLDIEEFQKLPLPPGLGSAA 373
                        S  LVNG LHWI     +  A  ++ F L  E+F+++   P  G   
Sbjct: 231 -----------RASGALVNGRLHWISRPCRNKPARRLVSFDLTDEQFREVS-KPDCGGLN 278

Query: 372 NSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVESSWTKEYVIRI-------TQMDRDY 214
             N  LV L  CL      N   + IWVMK Y V+ SW KEY I            DR  
Sbjct: 279 RCNYHLVVLRGCLSAAVYCNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQL 338

Query: 213 RL-------DPIQPVQLMKNGEMLLLCSDRRNSYLAYYNTKTKTFRYSDI---GSLWRIL 64
           ++         +  + ++KNGE+LL   + +N  L  Y+ K   F+  ++    + ++ +
Sbjct: 339 KIWKNSSNGRVVGALCVLKNGEILL---EYKNRVLVSYDPKNGKFKDIELQGAPNWFQTV 395

Query: 63  PHLGSL 46
            H+GSL
Sbjct: 396 VHVGSL 401


>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 18/239 (7%)
 Frame = -3

Query: 720 FDPVSKVFKVIRILINLVDNLRNESIQ--------EETAAEVYTLG---TDE---WRSLG 583
           F  ++K +KV++I+     +  N  I         +++  ++ TL    TD+   WRSLG
Sbjct: 169 FHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLG 228

Query: 582 KVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEEVILFKLDIEEFQKL 403
           K P+ F + S             S+ LVNG LH++      +   + + F L+ EEF+++
Sbjct: 229 KAPYKFVKRS-------------SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEI 275

Query: 402 PLPPGLGSAANSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVESSWTKEYVIRITQMD 223
           P  P  G    +N  LV L  CLC V   N   + IWVMK YGV+ SW KEY I  T + 
Sbjct: 276 P-KPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIG-TYLP 333

Query: 222 RDYRLDPIQPVQLMKNGE----MLLLCSDRRNSYLAYYNTKTKTFRYSDIGSLWRILPH 58
           +  + +  +P+ + KN E    + +LC       L  Y ++        +G    +L H
Sbjct: 334 KGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFH 392