BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024259
         (760 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32533.3| unnamed protein product [Vitis vinifera]              231   1e-58
ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...   231   1e-58
ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|2...   226   5e-57
ref|XP_002519113.1| pentatricopeptide repeat-containing protein,...   209   7e-52
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...   204   2e-50

>emb|CBI32533.3| unnamed protein product [Vitis vinifera]
          Length = 299

 Score =  231 bits (589), Expect = 1e-58
 Identities = 107/196 (54%), Positives = 150/196 (76%)
 Frame = -2

Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580
           MGE  +LW+EMR+K+++ D+MAYNT+I G C   E+ER E++FR+ME+  I++TC+T+EH
Sbjct: 103 MGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEH 162

Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400
           LI GYCE GDV+SA+LLY++MCR K FR E  TV+ +I  +C   ++ +ALK  R A+  
Sbjct: 163 LINGYCEIGDVDSAVLLYKDMCR-KGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGN 221

Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220
               P G+SYE LI+G CEEGKME+A KLQ+EMVGKGF+P++EIY+ FI GY +QGN+E+
Sbjct: 222 VEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEI 281

Query: 219 SRNLRKEMVDFGLKQE 172
           +  LRKEM +  ++QE
Sbjct: 282 AETLRKEMFETQMQQE 297


>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Vitis vinifera]
          Length = 492

 Score =  231 bits (589), Expect = 1e-58
 Identities = 107/196 (54%), Positives = 150/196 (76%)
 Frame = -2

Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580
           MGE  +LW+EMR+K+++ D+MAYNT+I G C   E+ER E++FR+ME+  I++TC+T+EH
Sbjct: 296 MGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEH 355

Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400
           LI GYCE GDV+SA+LLY++MCR K FR E  TV+ +I  +C   ++ +ALK  R A+  
Sbjct: 356 LINGYCEIGDVDSAVLLYKDMCR-KGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGN 414

Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220
               P G+SYE LI+G CEEGKME+A KLQ+EMVGKGF+P++EIY+ FI GY +QGN+E+
Sbjct: 415 VEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEI 474

Query: 219 SRNLRKEMVDFGLKQE 172
           +  LRKEM +  ++QE
Sbjct: 475 AETLRKEMFETQMQQE 490


>ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score =  226 bits (575), Expect = 5e-57
 Identities = 108/205 (52%), Positives = 152/205 (74%)
 Frame = -2

Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580
           + EA RLWDEMRVK + PDV+AYNT+I G C+  E+E+AE +FR+M +  IE++C+TFEH
Sbjct: 298 LSEAERLWDEMRVKGIMPDVVAYNTIIGGFCKAGEVEKAEGLFREMGLSGIESSCVTFEH 357

Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400
           LI GYC  GDV SA+L+Y++M R ++FR E  T+E +I  +C + ++F+ALK  R A++ 
Sbjct: 358 LIEGYCRIGDVNSAILVYKDM-RRRDFRLEALTMEVLIGGLCEQKRVFEALKIMRSAMRD 416

Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220
               P+G+SYE LI GLCE+GKME+ALKLQ+EMVGKGF+P+  IY  FI GY + GNEE+
Sbjct: 417 VSFHPNGKSYELLINGLCEDGKMEEALKLQSEMVGKGFDPNSAIYGAFIEGYVKLGNEEM 476

Query: 219 SRNLRKEMVDFGLKQEGDEQDELTN 145
           +  LRKEM    + Q+  ++D +T+
Sbjct: 477 AAMLRKEM---SVAQKQQQEDNVTD 498


>ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541776|gb|EEF43324.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  209 bits (531), Expect = 7e-52
 Identities = 100/194 (51%), Positives = 142/194 (73%)
 Frame = -2

Query: 753 EAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLI 574
           E  +LW+EMR K +K DV+AYNT+I G C+  E+E+AE++ R+ME++ +EA C+TFEHLI
Sbjct: 292 EIEKLWEEMRAKGIKGDVVAYNTVIGGFCKIGEIEKAEELSREMELNGVEANCVTFEHLI 351

Query: 573 RGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHG 394
            GYC  GDV+SA+L++++M R K FR E   ++ +I  +C K ++ +AL+  R A++  G
Sbjct: 352 NGYCSVGDVDSAILVFKHMVR-KGFRAEGSVMDVLIGGLCEKRRVSEALEIMRIAMRNDG 410

Query: 393 LCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSR 214
              SG+SYE LI+GLC++GKM++ALKLQ EMVG GFEP+ EIY  FI GY + GNEE++ 
Sbjct: 411 FRLSGKSYELLIKGLCKDGKMDEALKLQAEMVGGGFEPNFEIYGAFIDGYMKLGNEEMAA 470

Query: 213 NLRKEMVDFGLKQE 172
            LRKEM     +QE
Sbjct: 471 MLRKEMSGIQKRQE 484


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Glycine max]
          Length = 487

 Score =  204 bits (518), Expect = 2e-50
 Identities = 92/189 (48%), Positives = 142/189 (75%)
 Frame = -2

Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580
           MG+A +LW+E+R ++++PDV++YNT+I G C   ++ RAE+ FR+M +  +  T  T+EH
Sbjct: 294 MGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMAVAGVGTTASTYEH 353

Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400
           L++GYC  GDV+SA+L+Y++M R+ + RP+  T++ +IR +C K ++ ++L+F R AV +
Sbjct: 354 LVKGYCNIGDVDSAVLVYKDMARS-DLRPDASTLDVMIRLLCDKGRVRESLEFVRCAVGK 412

Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220
             L P  +SYE LI+GLC +G+ME+ALK+Q EMVGKGF+P+ EIY  F+ GY R GNEE+
Sbjct: 413 FDLIPMEKSYEALIKGLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYVRHGNEEM 472

Query: 219 SRNLRKEMV 193
           +  LRKEM+
Sbjct: 473 AEALRKEML 481



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
 Frame = -2

Query: 693 YNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVESAMLLYRNMC 514
           ++ LIK   ++++++ + +I R +    I     T   LI   C++  V+    +YR   
Sbjct: 163 FDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDEGYAIYREFF 222

Query: 513 RTKE-----------FR--PEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRS 373
           R  E           FR  P V T  +++   C ++ + + ++     +K +   P+  S
Sbjct: 223 RLDEENNEISKRGSGFRVTPNVHTYNDLMLC-CYQDGLVERVEKIWIEMKCN-YKPNAYS 280

Query: 372 YEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMV 193
           Y  L+   C+EG+M DA KL  E+  +  EP V  YN  I G+   G+   +    +EM 
Sbjct: 281 YSVLMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMA 340

Query: 192 DFGL 181
             G+
Sbjct: 341 VAGV 344