BLASTX nr result
ID: Coptis25_contig00024259
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024259 (760 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI32533.3| unnamed protein product [Vitis vinifera] 231 1e-58 ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi... 231 1e-58 ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|2... 226 5e-57 ref|XP_002519113.1| pentatricopeptide repeat-containing protein,... 209 7e-52 ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi... 204 2e-50 >emb|CBI32533.3| unnamed protein product [Vitis vinifera] Length = 299 Score = 231 bits (589), Expect = 1e-58 Identities = 107/196 (54%), Positives = 150/196 (76%) Frame = -2 Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580 MGE +LW+EMR+K+++ D+MAYNT+I G C E+ER E++FR+ME+ I++TC+T+EH Sbjct: 103 MGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEH 162 Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400 LI GYCE GDV+SA+LLY++MCR K FR E TV+ +I +C ++ +ALK R A+ Sbjct: 163 LINGYCEIGDVDSAVLLYKDMCR-KGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGN 221 Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220 P G+SYE LI+G CEEGKME+A KLQ+EMVGKGF+P++EIY+ FI GY +QGN+E+ Sbjct: 222 VEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEI 281 Query: 219 SRNLRKEMVDFGLKQE 172 + LRKEM + ++QE Sbjct: 282 AETLRKEMFETQMQQE 297 >ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera] Length = 492 Score = 231 bits (589), Expect = 1e-58 Identities = 107/196 (54%), Positives = 150/196 (76%) Frame = -2 Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580 MGE +LW+EMR+K+++ D+MAYNT+I G C E+ER E++FR+ME+ I++TC+T+EH Sbjct: 296 MGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEH 355 Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400 LI GYCE GDV+SA+LLY++MCR K FR E TV+ +I +C ++ +ALK R A+ Sbjct: 356 LINGYCEIGDVDSAVLLYKDMCR-KGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGN 414 Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220 P G+SYE LI+G CEEGKME+A KLQ+EMVGKGF+P++EIY+ FI GY +QGN+E+ Sbjct: 415 VEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEI 474 Query: 219 SRNLRKEMVDFGLKQE 172 + LRKEM + ++QE Sbjct: 475 AETLRKEMFETQMQQE 490 >ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1| predicted protein [Populus trichocarpa] Length = 498 Score = 226 bits (575), Expect = 5e-57 Identities = 108/205 (52%), Positives = 152/205 (74%) Frame = -2 Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580 + EA RLWDEMRVK + PDV+AYNT+I G C+ E+E+AE +FR+M + IE++C+TFEH Sbjct: 298 LSEAERLWDEMRVKGIMPDVVAYNTIIGGFCKAGEVEKAEGLFREMGLSGIESSCVTFEH 357 Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400 LI GYC GDV SA+L+Y++M R ++FR E T+E +I +C + ++F+ALK R A++ Sbjct: 358 LIEGYCRIGDVNSAILVYKDM-RRRDFRLEALTMEVLIGGLCEQKRVFEALKIMRSAMRD 416 Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220 P+G+SYE LI GLCE+GKME+ALKLQ+EMVGKGF+P+ IY FI GY + GNEE+ Sbjct: 417 VSFHPNGKSYELLINGLCEDGKMEEALKLQSEMVGKGFDPNSAIYGAFIEGYVKLGNEEM 476 Query: 219 SRNLRKEMVDFGLKQEGDEQDELTN 145 + LRKEM + Q+ ++D +T+ Sbjct: 477 AAMLRKEM---SVAQKQQQEDNVTD 498 >ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541776|gb|EEF43324.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 486 Score = 209 bits (531), Expect = 7e-52 Identities = 100/194 (51%), Positives = 142/194 (73%) Frame = -2 Query: 753 EAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLI 574 E +LW+EMR K +K DV+AYNT+I G C+ E+E+AE++ R+ME++ +EA C+TFEHLI Sbjct: 292 EIEKLWEEMRAKGIKGDVVAYNTVIGGFCKIGEIEKAEELSREMELNGVEANCVTFEHLI 351 Query: 573 RGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHG 394 GYC GDV+SA+L++++M R K FR E ++ +I +C K ++ +AL+ R A++ G Sbjct: 352 NGYCSVGDVDSAILVFKHMVR-KGFRAEGSVMDVLIGGLCEKRRVSEALEIMRIAMRNDG 410 Query: 393 LCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSR 214 SG+SYE LI+GLC++GKM++ALKLQ EMVG GFEP+ EIY FI GY + GNEE++ Sbjct: 411 FRLSGKSYELLIKGLCKDGKMDEALKLQAEMVGGGFEPNFEIYGAFIDGYMKLGNEEMAA 470 Query: 213 NLRKEMVDFGLKQE 172 LRKEM +QE Sbjct: 471 MLRKEMSGIQKRQE 484 >ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Glycine max] Length = 487 Score = 204 bits (518), Expect = 2e-50 Identities = 92/189 (48%), Positives = 142/189 (75%) Frame = -2 Query: 759 MGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEH 580 MG+A +LW+E+R ++++PDV++YNT+I G C ++ RAE+ FR+M + + T T+EH Sbjct: 294 MGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMAVAGVGTTASTYEH 353 Query: 579 LIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKR 400 L++GYC GDV+SA+L+Y++M R+ + RP+ T++ +IR +C K ++ ++L+F R AV + Sbjct: 354 LVKGYCNIGDVDSAVLVYKDMARS-DLRPDASTLDVMIRLLCDKGRVRESLEFVRCAVGK 412 Query: 399 HGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEEL 220 L P +SYE LI+GLC +G+ME+ALK+Q EMVGKGF+P+ EIY F+ GY R GNEE+ Sbjct: 413 FDLIPMEKSYEALIKGLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYVRHGNEEM 472 Query: 219 SRNLRKEMV 193 + LRKEM+ Sbjct: 473 AEALRKEML 481 Score = 57.4 bits (137), Expect = 3e-06 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 13/184 (7%) Frame = -2 Query: 693 YNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVESAMLLYRNMC 514 ++ LIK ++++++ + +I R + I T LI C++ V+ +YR Sbjct: 163 FDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDEGYAIYREFF 222 Query: 513 RTKE-----------FR--PEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRS 373 R E FR P V T +++ C ++ + + ++ +K + P+ S Sbjct: 223 RLDEENNEISKRGSGFRVTPNVHTYNDLMLC-CYQDGLVERVEKIWIEMKCN-YKPNAYS 280 Query: 372 YEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMV 193 Y L+ C+EG+M DA KL E+ + EP V YN I G+ G+ + +EM Sbjct: 281 YSVLMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMA 340 Query: 192 DFGL 181 G+ Sbjct: 341 VAGV 344