BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024204
         (1223 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21655.3| unnamed protein product [Vitis vinifera]              172   1e-40
ref|XP_003540645.1| PREDICTED: DNA repair protein XRCC2 homolog ...   152   2e-34
ref|XP_003567316.1| PREDICTED: DNA repair protein XRCC2 homolog ...   125   2e-26
ref|XP_002272275.1| PREDICTED: DNA repair protein XRCC2 homolog ...   122   1e-25
ref|XP_002864907.1| predicted protein [Arabidopsis lyrata subsp....   117   5e-24

>emb|CBI21655.3| unnamed protein product [Vitis vinifera]
          Length = 325

 Score =  172 bits (437), Expect = 1e-40
 Identities = 90/168 (53%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
 Frame = +1

Query: 1   EAHGVGVHLLMIDSISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPM 180
           E HGV  H LMIDSI AFYW+DRAST + L ++ R+ LSL ++ ETVV+EI+KLL V PM
Sbjct: 158 ETHGVTAHFLMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEEIRKLLLVHPM 217

Query: 181 LVLSTKATILGEGSLTSAHNRNFRK-XXXXXXXXXXXXXXCQKHSYREYMPSTWQIFVTH 357
           LVL+TKATILG+   T+   R   K                QK SYRE+MP  WQ FVTH
Sbjct: 218 LVLATKATILGDTYSTNEVKRTSMKLSSNDPSNLRTVTGGPQKLSYREFMPLVWQSFVTH 277

Query: 358 RVLVQVLDEDLDNSKHQIQSTYVSQWLLPSLSFLDKFRVKDAGIYMVS 501
           R+LV+  D+D  NSK+Q +S ++S+WL+PSL+F DKF V+DAG+++VS
Sbjct: 278 RILVRAADDDPANSKYQSRSIFLSEWLMPSLNFSDKFIVRDAGVFVVS 325


>ref|XP_003540645.1| PREDICTED: DNA repair protein XRCC2 homolog [Glycine max]
          Length = 310

 Score =  152 bits (383), Expect = 2e-34
 Identities = 83/167 (49%), Positives = 106/167 (63%)
 Frame = +1

Query: 1   EAHGVGVHLLMIDSISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPM 180
           E HGVGVHLLMIDSI AF+WMDRAS  +S   ++++ L L  V E VVQ I+KLLQV PM
Sbjct: 147 EVHGVGVHLLMIDSIGAFHWMDRASMFLSQRENRKKKLFLQTVSEAVVQNIKKLLQVHPM 206

Query: 181 LVLSTKATILGEGSLTSAHNRNFRKXXXXXXXXXXXXXXCQKHSYREYMPSTWQIFVTHR 360
           L+++TK+ I G    T++   N  K               Q + YREYMPS WQ FVTHR
Sbjct: 207 LIIATKSVIFGNRYSTAS---NEVKGNMEERCSKNVTRNHQNYLYREYMPSVWQSFVTHR 263

Query: 361 VLVQVLDEDLDNSKHQIQSTYVSQWLLPSLSFLDKFRVKDAGIYMVS 501
           +LV+  DE    + +Q  S Y+ +WLLP LSF DK  VKDAG+++ S
Sbjct: 264 ILVRSSDEHPVTTNNQNSSFYLLEWLLPRLSFPDKIVVKDAGVFVDS 310


>ref|XP_003567316.1| PREDICTED: DNA repair protein XRCC2 homolog [Brachypodium
           distachyon]
          Length = 335

 Score =  125 bits (314), Expect = 2e-26
 Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
 Frame = +1

Query: 4   AHGVGVHLLMIDSISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPML 183
           A GVG++ LM+DSI AFYW+DR S P    + K +  SL ++ E+VVQEI+K LQ+QP+L
Sbjct: 169 ALGVGIYFLMLDSIGAFYWIDRCSQPTR--DSKGKTQSLQSITESVVQEIRKFLQLQPIL 226

Query: 184 VLSTKATILGEGSLTSAHNRNFRKXXXXXXXXXXXXXXCQKH------SYREYMPSTWQI 345
           VL +KA I GEG  TS    +F++                K       S REYMPS WQ 
Sbjct: 227 VLVSKAHIYGEGITTS---NDFQRGTSKFLTEDSTVLRYSKREEEINTSCREYMPSVWQT 283

Query: 346 FVTHRVLVQVLDEDLDNSKHQIQSTYVSQWLLPSLSFLDKFRVKDAGIYMV 498
           FVTHR+ +Q         + ++ S + S+W+ PSL+  +KF ++D+G+ ++
Sbjct: 284 FVTHRIKLQEESGISSEQESEVLSIHTSEWVRPSLNIKEKFYIRDSGVVVI 334


>ref|XP_002272275.1| PREDICTED: DNA repair protein XRCC2 homolog [Vitis vinifera]
          Length = 315

 Score =  122 bits (307), Expect = 1e-25
 Identities = 67/125 (53%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
 Frame = +1

Query: 1   EAHGVGVHLLMIDSISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPM 180
           E HGV  H LMIDSI AFYW+DRAST + L ++ R+ LSL ++ ETVV+EI+KLL V PM
Sbjct: 173 ETHGVTAHFLMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEEIRKLLLVHPM 232

Query: 181 LVLSTKATILGEGSLTSAHNRNFRK-XXXXXXXXXXXXXXCQKHSYREYMPSTWQIFVTH 357
           LVL+TKATILG+   T+   R   K                QK SYRE+MP  WQ FVTH
Sbjct: 233 LVLATKATILGDTYSTNEVKRTSMKLSSNDPSNLRTVTGGPQKLSYREFMPLVWQSFVTH 292

Query: 358 RVLVQ 372
           R+LV+
Sbjct: 293 RILVR 297


>ref|XP_002864907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310742|gb|EFH41166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 389

 Score =  117 bits (294), Expect = 5e-24
 Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 1/188 (0%)
 Frame = +1

Query: 1   EAHGVGVHLLMIDSISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPM 180
           EA G  V +LMIDSI AF+W DR S+ ++L    R++LSL  VVE +VQE++KLLQV  +
Sbjct: 178 EACGSQVGVLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVEMIVQELKKLLQVHSL 237

Query: 181 LVLSTKATILGEGSLTSAHNRNFRKXXXXXXXXXXXXXXCQKHSYREYMPSTWQIFVTHR 360
           +VL+TKATI  E      +NR F                 Q+   RE+MPS+WQ FVTH+
Sbjct: 238 VVLATKATIYEEKYPAIENNRKFSS---NDDFPGNAASKAQQPLIREFMPSSWQAFVTHK 294

Query: 361 VLV-QVLDEDLDNSKHQIQSTYVSQWLLPSLSFLDKFRVKDAGIYMVS*SASKPARRKFK 537
           +++ +  D     +  Q  S Y+ +WL P LS +D+F V D   +    S +KP    F 
Sbjct: 295 IIIRKSADHRSLQTGQQNLSAYLLEWLQPQLSSIDRFIVDDVRKHTTIASLAKP----FY 350

Query: 538 SENLSV*C 561
           S+ L + C
Sbjct: 351 SKLLLIYC 358