BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024159
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   271   6e-71
emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]   270   2e-70
gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indi...   251   6e-65
ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group] g...   251   6e-65
ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [S...   234   8e-60

>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  271 bits (693), Expect = 6e-71
 Identities = 131/190 (68%), Positives = 160/190 (84%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGF 184
           RD V+WNSMI GLA+NGFA +AI L+  MK  EVKPN+ITFVGL+TACTHAG +ELG  F
Sbjct: 393 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEF 452

Query: 185 FKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIHL 364
           F+SM +D+NI P +EH ACIV L+C+SGRL +AY FI +ME+EPNVVIWGTLLSA RIHL
Sbjct: 453 FRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHL 512

Query: 365 NVELAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMRDKGLQKTAAYSWI 544
           NVELAE + +KLL LEP+NSGNYV+LSNIY+S GR ++AL +R LM+DK +QK AAYSW+
Sbjct: 513 NVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWV 572

Query: 545 ELDDLVHKFL 574
           E++D VHKFL
Sbjct: 573 EVEDRVHKFL 582



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGF 184
           RDVV+W++MI G A NG + EA++LF  MK +++KPND+T V +L+AC   G +E G   
Sbjct: 292 RDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETG-ER 350

Query: 185 FKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIHL 364
             S      ++  V   + ++ +Y K G + +A     K+    NV  W +++    I+ 
Sbjct: 351 IGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVT-WNSMIMGLAING 409

Query: 365 NVE--LAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMR 505
             E  +A ++  K + ++P N   +V L    +  G  E  L     MR
Sbjct: 410 FAEDAIALYNRMKEIEVKPNNI-TFVGLMTACTHAGHVELGLEFFRSMR 457


>emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
          Length = 396

 Score =  270 bits (689), Expect = 2e-70
 Identities = 131/190 (68%), Positives = 159/190 (83%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGF 184
           RD V+WNSMI GLA+NGFA +AI L+  MK  EVKPN+ITFVGLLTACTHAG +ELG  F
Sbjct: 171 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEF 230

Query: 185 FKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIHL 364
           F+SM +D+NI P +EH ACIV L+C+SGRL +AY FI +ME+EPNVVIWGTLLSA RIHL
Sbjct: 231 FRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHL 290

Query: 365 NVELAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMRDKGLQKTAAYSWI 544
           NVELAE + +KLL LEP+NSGNYV+LSNIY+S  R ++AL +R LM+DK +QK AAYSW+
Sbjct: 291 NVELAELAGKKLLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSWV 350

Query: 545 ELDDLVHKFL 574
           E++D VHKFL
Sbjct: 351 EVEDRVHKFL 360



 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGF 184
           RDVV W++MI G A NG + EA++LF  MK +++KPND+T V +L+AC   G +E G   
Sbjct: 70  RDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETG-ER 128

Query: 185 FKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIHL 364
             S      ++  V   + ++ +Y K G + +A     K+    NV  W +++    I+ 
Sbjct: 129 IGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVT-WNSMIMGLAING 187

Query: 365 NVE--LAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMR 505
             E  +A ++  K + ++P N   +V L    +  G  E  L     MR
Sbjct: 188 FAEDAIALYNRMKEIEVKPNNI-TFVGLLTACTHAGHVELGLEFFRSMR 235


>gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  251 bits (641), Expect = 6e-65
 Identities = 121/191 (63%), Positives = 149/191 (78%)
 Frame = +2

Query: 2   HRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCG 181
           H+ V++WNSM+ GLA+NGFA++AI L+ EM   +V+PN+ITFV LLTACTHAGL++ G  
Sbjct: 380 HKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMS 439

Query: 182 FFKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIH 361
           FFK M T +++ P+VEHCACIV L CKSGRL+EAY FI  ME+EPN VIW TLLSACR H
Sbjct: 440 FFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAH 499

Query: 362 LNVELAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMRDKGLQKTAAYSW 541
            +VELA+ +  KLLVLEP+NS  YVLLSNIY+  G   D   +R+LMR K +QK +AYSW
Sbjct: 500 ADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSW 559

Query: 542 IELDDLVHKFL 574
           IELD  VHKFL
Sbjct: 560 IELDGEVHKFL 570



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGF 184
           RDVV+W++MI G A NG   E+++LF  MK +  KPN++T VG+L+AC   G  ELG G 
Sbjct: 280 RDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELG-GQ 338

Query: 185 FKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIH- 361
             S     N+       + ++ +Y K G +  A     +ME    V+ W +++    ++ 
Sbjct: 339 IGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME-HKVVITWNSMMRGLALNG 397

Query: 362 -------LNVELAEHSVQ 394
                  L  E+ E  VQ
Sbjct: 398 FAQDAITLYKEMTEEDVQ 415


>ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
           gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza
           sativa Japonica Group] gi|125571815|gb|EAZ13330.1|
           hypothetical protein OsJ_03251 [Oryza sativa Japonica
           Group]
          Length = 608

 Score =  251 bits (641), Expect = 6e-65
 Identities = 121/191 (63%), Positives = 149/191 (78%)
 Frame = +2

Query: 2   HRDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCG 181
           H+ V++WNSM+ GLA+NGFA++AI L+ EM   +V+PN+ITFV LLTACTHAGL++ G  
Sbjct: 380 HKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMS 439

Query: 182 FFKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIH 361
           FFK M T +++ P+VEHCACIV L CKSGRL+EAY FI  ME+EPN VIW TLLSACR H
Sbjct: 440 FFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAH 499

Query: 362 LNVELAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMRDKGLQKTAAYSW 541
            +VELA+ +  KLLVLEP+NS  YVLLSNIY+  G   D   +R+LMR K +QK +AYSW
Sbjct: 500 ADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSW 559

Query: 542 IELDDLVHKFL 574
           IELD  VHKFL
Sbjct: 560 IELDGEVHKFL 570



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGF 184
           RDVV+W++MI G A NG   E+++LF  MK +  KPN++T VG+L+AC   G  ELG G 
Sbjct: 280 RDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELG-GQ 338

Query: 185 FKSMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIH- 361
             S     N+       + ++ +Y K G +  A     +ME    V+ W +++    ++ 
Sbjct: 339 IGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME-HKVVITWNSMMRGLALNG 397

Query: 362 -------LNVELAEHSVQ 394
                  L  E+ E  VQ
Sbjct: 398 FAQDAITLYKEMTEEDVQ 415


>ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
            gi|241930382|gb|EES03527.1| hypothetical protein
            SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  234 bits (597), Expect = 8e-60
 Identities = 115/188 (61%), Positives = 140/188 (74%)
 Frame = +2

Query: 11   VVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELGCGFFK 190
            VV+WNSMI GLA+NGFA +AI L+ +M    ++PN++TFV LLTACTHAGL++ G  FF+
Sbjct: 472  VVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFE 531

Query: 191  SMTTDYNIVPKVEHCACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLLSACRIHLNV 370
             M    ++ P+VEHCACIV L CKSGRL EAY FI  ME+EPN VIW TLLSACR H +V
Sbjct: 532  EMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADV 591

Query: 371  ELAEHSVQKLLVLEPENSGNYVLLSNIYSSVGRCEDALNMRNLMRDKGLQKTAAYSWIEL 550
            ELA+ +  KL+ LEP NS  YVLLSNIY+  G   D   +R+LMR K LQK +AYSWIEL
Sbjct: 592  ELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIEL 651

Query: 551  DDLVHKFL 574
            D  VH+FL
Sbjct: 652  DGEVHRFL 659



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
 Frame = +2

Query: 5   RDVVSWNSMIGGLAVNGFAREAIDLFMEMKVSEVKPNDITFVGLLTACTHAGLIELG--- 175
           RDVV+W++MI G + NG   E+++LF  MK +  KPN++T VG+L+AC   G  ELG   
Sbjct: 369 RDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQI 428

Query: 176 CGFFKSMTTDYNIVPKVEHC-ACIVALYCKSGRLKEAYWFITKMEIEPNVVIWGTLL 343
             + +S T     +P   +  + ++ +Y K G +  A     +ME +  VV W +++
Sbjct: 429 GNYIESQT-----LPLTSYLGSALIDMYTKCGHVARARSVFNRME-QKVVVTWNSMI 479