BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024149
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
ref|NP_188004.1| pentatricopeptide repeat-containing protein [Ar...   100   2e-19
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,...    98   6e-19
ref|XP_002882856.1| pentatricopeptide repeat-containing protein ...    93   3e-17
emb|CBI39303.3| unnamed protein product [Vitis vinifera]               88   6e-16

>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  104 bits (259), Expect = 9e-21
 Identities = 46/86 (53%), Positives = 66/86 (76%)
 Frame = -1

Query: 261 KCGCFDSGQRLFDRMSKRDVVSWNLLVSGYRQMGFHGKAMEVFHDSRFADVTLDKFSYAS 82
           KCG  D  ++LFDRM KR+VVSWN L+SGY QMGF+ + M +F ++R +D+ LDKF++++
Sbjct: 66  KCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSN 125

Query: 81  ALGVCAQMRDVKLGEIVHGLILVSGL 4
           AL VC +  D++LG ++H LI VSGL
Sbjct: 126 ALSVCGRTLDLRLGRLIHALITVSGL 151


>ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g13880 gi|9294611|dbj|BAB02912.1| probable
           selenium-binding protein [Arabidopsis thaliana]
           gi|332641909|gb|AEE75430.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 46/88 (52%), Positives = 70/88 (79%), Gaps = 2/88 (2%)
 Frame = -1

Query: 258 CGCFDSG--QRLFDRMSKRDVVSWNLLVSGYRQMGFHGKAMEVFHDSRFADVTLDKFSYA 85
           C C + G  ++LFDRM +R+++S+N L+SGY QMGF+ +AME+F ++R A++ LDKF+YA
Sbjct: 93  CKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYA 152

Query: 84  SALGVCAQMRDVKLGEIVHGLILVSGLS 1
            ALG C +  D+ LGE++HGL++V+GLS
Sbjct: 153 GALGFCGERCDLDLGELLHGLVVVNGLS 180


>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 793

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/87 (51%), Positives = 64/87 (73%)
 Frame = -1

Query: 264 SKCGCFDSGQRLFDRMSKRDVVSWNLLVSGYRQMGFHGKAMEVFHDSRFADVTLDKFSYA 85
           SK G   + Q+LFDRMS+R V+S+N+L+SGY  MGF+ KA+ +F ++R A + LDKFSYA
Sbjct: 55  SKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYA 114

Query: 84  SALGVCAQMRDVKLGEIVHGLILVSGL 4
             L  C Q++D  LG+++HGL +V GL
Sbjct: 115 GVLSACGQIKDFALGKVIHGLAIVCGL 141


>ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328696|gb|EFH59115.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 753

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 42/88 (47%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
 Frame = -1

Query: 258 CGCFDSG--QRLFDRMSKRDVVSWNLLVSGYRQMGFHGKAMEVFHDSRFADVTLDKFSYA 85
           C C + G  ++LFDRM +R+++S+N L+SGY Q+GF+ +AME+F ++R  ++ LDKF+YA
Sbjct: 94  CKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYA 153

Query: 84  SALGVCAQMRDVKLGEIVHGLILVSGLS 1
            ALG C +  D+  G+++HGL++V+GLS
Sbjct: 154 GALGFCGERCDLDFGKLLHGLVVVNGLS 181


>emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = -1

Query: 219 MSKRDVVSWNLLVSGYRQMGFHGKAMEVFHDSRFADVTLDKFSYASALGVCAQMRDVKLG 40
           M KR+VVSWN L+SGY QMGF+ + M +F ++R +D+ LDKF++++AL VC +  D++LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 39  EIVHGLILVSGL 4
            ++H LI VSGL
Sbjct: 61  RLIHALITVSGL 72