BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024138
         (617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   126   4e-27
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   126   4e-27
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   121   9e-26
ref|XP_002515858.1| conserved hypothetical protein [Ricinus comm...   119   6e-25
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   116   4e-24

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score =  126 bits (316), Expect = 4e-27
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
 Frame = -3

Query: 567 PWFFSFVYGEPIAHNRNKVWNELRGVAPSIPGPWILFGDFNAIASLDEKIGGRSKITKSM 388
           PW  SFVYGEP    R+  WN LR +     GPW+  GDFN +  LDE +G R +    M
Sbjct: 104 PWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHM 163

Query: 387 EEFNGLITDLGLVDLGFKGPKYTWSNNRRIQDHILERLDRALATPEWLAAFPNAQIRTWA 208
           + F   + D GL+DLGF GPK+TWSN +    +   RLDRA+A  E+   F +  +    
Sbjct: 164 QHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVI 223

Query: 207 NATSDHISLFINLAKKDE-----KLPRPFKFFDMWLKNEGCLAVIEKAW 76
             +SDH ++ I+L++++       + + F+F   WL+ E    V+E +W
Sbjct: 224 TTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSW 272


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  126 bits (316), Expect = 4e-27
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
 Frame = -3

Query: 567 PWFFSFVYGEPIAHNRNKVWNELRGVAPSIPGPWILFGDFNAIASLDEKIGGRSKITKSM 388
           PW  SFVYGEP    R+  WN LR +     GPW+  GDFN +  LDE +G R +    M
Sbjct: 61  PWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHM 120

Query: 387 EEFNGLITDLGLVDLGFKGPKYTWSNNRRIQDHILERLDRALATPEWLAAFPNAQIRTWA 208
           + F   + D GL+DLGF GPK+TWSN +    +   RLDRA+A  E+   F +  +    
Sbjct: 121 QHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVI 180

Query: 207 NATSDHISLFINLAKKDE-----KLPRPFKFFDMWLKNEGCLAVIEKAW 76
             +SDH ++ I+L++++       + + F+F   WL+ E    V+E +W
Sbjct: 181 TTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSW 229


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1621

 Score =  121 bits (304), Expect = 9e-26
 Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
 Frame = -3

Query: 549 VYGEPIAHNRNKVWNELRGVAPSIPGPWILFGDFNAIASLDEKIGGRSKITKSMEEFNGL 370
           +YG+  +  +++ W  +RG+  +   PW++ GDFN I    EK GGR K   +M+EF   
Sbjct: 351 LYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHA 410

Query: 369 ITDLGLVDLGFKGPKYTWSNNRRIQD-HILERLDRALATPEWLAAFPNAQIRTWANATSD 193
           +TD GL DLGF+G  +TW N+   Q+ +I ERLDRA+A PEW A FP A++       SD
Sbjct: 411 LTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSD 470

Query: 192 HISLFINLAKKDEKL-----PRPFKFFDMWLKNEGCLAVIEKAWN 73
           H  + I L  K++ +        F+F   WL+ E    V+++AW+
Sbjct: 471 HRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWD 515


>ref|XP_002515858.1| conserved hypothetical protein [Ricinus communis]
           gi|223545013|gb|EEF46527.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 269

 Score =  119 bits (297), Expect = 6e-25
 Identities = 66/185 (35%), Positives = 93/185 (50%)
 Frame = -3

Query: 561 FFSFVYGEPIAHNRNKVWNELRGVAPSIPGPWILFGDFNAIASLDEKIGGRSKITKSMEE 382
           F +F YGEP    R +VW  +  + P      +  GDF++I S  EK GGR    K ++ 
Sbjct: 78  FKTFCYGEPTKEFREEVWKRISSLKPPPHSSLVCVGDFSSIVSPSEKKGGRRPDDKQLQL 137

Query: 381 FNGLITDLGLVDLGFKGPKYTWSNNRRIQDHILERLDRALATPEWLAAFPNAQIRTWANA 202
           F+  +    L+D+GFKG  YTWSN +     ++ERLDRALA+ EW   FPNAQI      
Sbjct: 138 FSDFVNRNELIDVGFKGTMYTWSNKQLGDKCVMERLDRALASLEWRCQFPNAQIIHEYML 197

Query: 201 TSDHISLFINLAKKDEKLPRPFKFFDMWLKNEGCLAVIEKAWNSISNDLPDNNFINKLEK 22
            SDH  L +          R F+F + W   + C  V+E  W     +    N + KL++
Sbjct: 198 GSDHHPLVLMEQAGSFSKKRLFRFEEKWKLRDRCKEVVEDCWMEHQREDSGWNCVTKLQQ 257

Query: 21  TKKDL 7
            K+ L
Sbjct: 258 CKEGL 262


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  116 bits (290), Expect = 4e-24
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 2/206 (0%)
 Frame = -3

Query: 615 SRHQVTGRIVNYFHKEPWFFSFVYGEPIAHNRNKVWNELRGVAPSIPGPWILFGDFNAIA 436
           S H +   +++      W    +YG P   N++  W+ LR +      P + FGDFN I 
Sbjct: 83  SAHHIHAVVLDENKNPIWNAMGIYGWPETSNKHLTWSLLRRLKQQCSLPVLFFGDFNEIT 142

Query: 435 SLDEKIGGRSKITKSMEEFNGLITDLGLVDLGFKGPKYTWSNNRRIQDHILERLDRALAT 256
           S++EK GG  +  + M+ F  +I D  + DLG+ G ++TW         I ERLDR LA 
Sbjct: 143 SIEEKEGGAPRCERVMDAFREVIDDCAVKDLGYVGNRFTWQRGNSPSTLIRERLDRMLAN 202

Query: 255 PEWLAAFPNAQIRTWANATSDHISLFINLAKKD--EKLPRPFKFFDMWLKNEGCLAVIEK 82
            EW   FP+ ++       SDH  L +     D   +  + FKF  MWL  E C  ++E+
Sbjct: 203 DEWCDNFPSWEVVHLPRYRSDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEE 262

Query: 81  AWNSISNDLPDNNFINKLEKTKKDLT 4
           AWN  + +    +  N+L++  + L+
Sbjct: 263 AWNGSAGE----DITNRLDEVSRSLS 284