BLASTX nr result
ID: Coptis25_contig00024122
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024122 (667 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4,... 188 9e-46 ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloropl... 177 2e-42 ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|2... 175 8e-42 ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidop... 165 8e-39 ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis t... 157 2e-36 >ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] gi|302142754|emb|CBI19957.3| unnamed protein product [Vitis vinifera] Length = 279 Score = 188 bits (477), Expect = 9e-46 Identities = 105/182 (57%), Positives = 123/182 (67%), Gaps = 5/182 (2%) Frame = +1 Query: 136 MGATLFTNYGFSMRCDHKSSHFQHSKEISKSKCTCLKALPEKGCSRAKTTQE-----CKV 300 MG ++FT+ FS R H I S + P+KG S AK + C Sbjct: 1 MGTSIFTSCSFSWRNHH---------HIIPSHRFLSHSSPDKGLSVAKAAVDTRQNGCVE 51 Query: 301 VEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQG 480 ++ EK LKRR+AIVS SL+++A LGFP EGLAV+KQGLLAGR+PGLSEPD+QG Sbjct: 52 FVDEETEKFSGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDEQG 111 Query: 481 KCLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLS 660 DEKSGGHGVGWSPIIPY FSVP GWEEVPVSIADLGGTEIDLRFA+S+EGRL Sbjct: 112 WRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLF 171 Query: 661 VV 666 V+ Sbjct: 172 VI 173 >ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223534553|gb|EEF36252.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis] Length = 270 Score = 177 bits (449), Expect = 2e-42 Identities = 101/182 (55%), Positives = 121/182 (66%), Gaps = 5/182 (2%) Frame = +1 Query: 136 MGATLFTNYGFSMRCDHK----SSHFQ-HSKEISKSKCTCLKALPEKGCSRAKTTQECKV 300 MG T+FT+ F + H+ SSH HS + E G SR + T Sbjct: 1 MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQ-------------ETGVSRIRAT----- 42 Query: 301 VEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQG 480 +E EK +LKRR+A+VS SL ++ LGFP +GLA +KQGLLAGRIPGLSEPD+QG Sbjct: 43 IEPREFEKPIGLLKRRSALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQG 102 Query: 481 KCLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLS 660 D+KSGGHGVGWSPIIPY+F VPQ WEEVPVSIADLGGTEIDLRF+SS+EGRL Sbjct: 103 WRTYRRPDDKSGGHGVGWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLF 162 Query: 661 VV 666 V+ Sbjct: 163 VI 164 >ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|222842669|gb|EEE80216.1| predicted protein [Populus trichocarpa] Length = 276 Score = 175 bits (443), Expect = 8e-42 Identities = 106/185 (57%), Positives = 123/185 (66%), Gaps = 8/185 (4%) Frame = +1 Query: 136 MGATLFTNYGFSMRCDHKS----SHF-QHSKEISKSKCTCLKALPEKGCSRAKTTQECK- 297 MG TL T+ G R H+ +H HS+E + P SRAK T E + Sbjct: 1 MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQE----------SFP----SRAKITAESRK 46 Query: 298 --VVEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPD 471 ++ +N EK LKRR+ +VS SLV+T+ LG EGLAV+KQGLLAGRIPGLSEPD Sbjct: 47 NGFLDGEN-EKSAGFLKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPD 105 Query: 472 KQGKCLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEG 651 QG D+KSGGHGVGWSPIIPY FSVPQGWEEVPVSIADLGGTEIDLRF SS+EG Sbjct: 106 DQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEG 165 Query: 652 RLSVV 666 RL V+ Sbjct: 166 RLFVI 170 >ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata] gi|297334963|gb|EFH65381.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata] Length = 256 Score = 165 bits (417), Expect = 8e-39 Identities = 82/121 (67%), Positives = 94/121 (77%) Frame = +1 Query: 304 EEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQGK 483 E E+ L RR+ + S FSLV++ L FP +GLAV+KQGLLAGR+PGLSEPD +G Sbjct: 30 ETQRDERCATALSRRSVLASGFSLVSSTALVFPGDGLAVVKQGLLAGRVPGLSEPDDEGW 89 Query: 484 CLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLSV 663 DEKSGGHGVGWSPIIPY+FSVPQ W EVPVSIADLGGTEIDLRFAS +EGRLSV Sbjct: 90 RTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSV 149 Query: 664 V 666 + Sbjct: 150 I 150 >ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis thaliana] gi|190358910|sp|O49292.2|PPD4_ARATH RecName: Full=PsbP domain-containing protein 4, chloroplastic; AltName: Full=OEC23-like protein 5; Flags: Precursor gi|332197812|gb|AEE35933.1| PsbP domain-containing protein 4 [Arabidopsis thaliana] Length = 260 Score = 157 bits (396), Expect = 2e-36 Identities = 81/111 (72%), Positives = 90/111 (81%) Frame = +1 Query: 334 VLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQGKCLLIAFDEKS 513 VL RR+ + S TTA L FP EGLAV+KQGLLAGR+PGLSEPD++G DEKS Sbjct: 45 VLSRRSVMASGLVSSTTA-LAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKS 103 Query: 514 GGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLSVV 666 GGHGVGWSPIIPY+FSVPQ W EVPVSIADLGGTEIDLRFAS +EGRLSV+ Sbjct: 104 GGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVI 154