BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024122
         (667 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4,...   188   9e-46
ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloropl...   177   2e-42
ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|2...   175   8e-42
ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidop...   165   8e-39
ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis t...   157   2e-36

>ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis
           vinifera] gi|302142754|emb|CBI19957.3| unnamed protein
           product [Vitis vinifera]
          Length = 279

 Score =  188 bits (477), Expect = 9e-46
 Identities = 105/182 (57%), Positives = 123/182 (67%), Gaps = 5/182 (2%)
 Frame = +1

Query: 136 MGATLFTNYGFSMRCDHKSSHFQHSKEISKSKCTCLKALPEKGCSRAKTTQE-----CKV 300
           MG ++FT+  FS R  H          I  S      + P+KG S AK   +     C  
Sbjct: 1   MGTSIFTSCSFSWRNHH---------HIIPSHRFLSHSSPDKGLSVAKAAVDTRQNGCVE 51

Query: 301 VEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQG 480
             ++  EK    LKRR+AIVS  SL+++A LGFP EGLAV+KQGLLAGR+PGLSEPD+QG
Sbjct: 52  FVDEETEKFSGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDEQG 111

Query: 481 KCLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLS 660
                  DEKSGGHGVGWSPIIPY FSVP GWEEVPVSIADLGGTEIDLRFA+S+EGRL 
Sbjct: 112 WRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLF 171

Query: 661 VV 666
           V+
Sbjct: 172 VI 173


>ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223534553|gb|EEF36252.1| Thylakoid
           lumenal 29.8 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 270

 Score =  177 bits (449), Expect = 2e-42
 Identities = 101/182 (55%), Positives = 121/182 (66%), Gaps = 5/182 (2%)
 Frame = +1

Query: 136 MGATLFTNYGFSMRCDHK----SSHFQ-HSKEISKSKCTCLKALPEKGCSRAKTTQECKV 300
           MG T+FT+  F  +  H+    SSH   HS +             E G SR + T     
Sbjct: 1   MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQ-------------ETGVSRIRAT----- 42

Query: 301 VEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQG 480
           +E    EK   +LKRR+A+VS  SL ++  LGFP +GLA +KQGLLAGRIPGLSEPD+QG
Sbjct: 43  IEPREFEKPIGLLKRRSALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQG 102

Query: 481 KCLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLS 660
                  D+KSGGHGVGWSPIIPY+F VPQ WEEVPVSIADLGGTEIDLRF+SS+EGRL 
Sbjct: 103 WRTYRRPDDKSGGHGVGWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLF 162

Query: 661 VV 666
           V+
Sbjct: 163 VI 164


>ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|222842669|gb|EEE80216.1|
           predicted protein [Populus trichocarpa]
          Length = 276

 Score =  175 bits (443), Expect = 8e-42
 Identities = 106/185 (57%), Positives = 123/185 (66%), Gaps = 8/185 (4%)
 Frame = +1

Query: 136 MGATLFTNYGFSMRCDHKS----SHF-QHSKEISKSKCTCLKALPEKGCSRAKTTQECK- 297
           MG TL T+ G   R  H+     +H   HS+E          + P    SRAK T E + 
Sbjct: 1   MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQE----------SFP----SRAKITAESRK 46

Query: 298 --VVEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPD 471
              ++ +N EK    LKRR+ +VS  SLV+T+ LG   EGLAV+KQGLLAGRIPGLSEPD
Sbjct: 47  NGFLDGEN-EKSAGFLKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPD 105

Query: 472 KQGKCLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEG 651
            QG       D+KSGGHGVGWSPIIPY FSVPQGWEEVPVSIADLGGTEIDLRF SS+EG
Sbjct: 106 DQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEG 165

Query: 652 RLSVV 666
           RL V+
Sbjct: 166 RLFVI 170


>ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp.
           lyrata] gi|297334963|gb|EFH65381.1| thylakoid lumenal
           29.8 kDa protein [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score =  165 bits (417), Expect = 8e-39
 Identities = 82/121 (67%), Positives = 94/121 (77%)
 Frame = +1

Query: 304 EEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQGK 483
           E    E+    L RR+ + S FSLV++  L FP +GLAV+KQGLLAGR+PGLSEPD +G 
Sbjct: 30  ETQRDERCATALSRRSVLASGFSLVSSTALVFPGDGLAVVKQGLLAGRVPGLSEPDDEGW 89

Query: 484 CLLIAFDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLSV 663
                 DEKSGGHGVGWSPIIPY+FSVPQ W EVPVSIADLGGTEIDLRFAS +EGRLSV
Sbjct: 90  RTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSV 149

Query: 664 V 666
           +
Sbjct: 150 I 150


>ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis thaliana]
           gi|190358910|sp|O49292.2|PPD4_ARATH RecName: Full=PsbP
           domain-containing protein 4, chloroplastic; AltName:
           Full=OEC23-like protein 5; Flags: Precursor
           gi|332197812|gb|AEE35933.1| PsbP domain-containing
           protein 4 [Arabidopsis thaliana]
          Length = 260

 Score =  157 bits (396), Expect = 2e-36
 Identities = 81/111 (72%), Positives = 90/111 (81%)
 Frame = +1

Query: 334 VLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQGKCLLIAFDEKS 513
           VL RR+ + S     TTA L FP EGLAV+KQGLLAGR+PGLSEPD++G       DEKS
Sbjct: 45  VLSRRSVMASGLVSSTTA-LAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKS 103

Query: 514 GGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLSVV 666
           GGHGVGWSPIIPY+FSVPQ W EVPVSIADLGGTEIDLRFAS +EGRLSV+
Sbjct: 104 GGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVI 154