BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024062
         (309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    86   2e-15
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...    82   4e-14
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    74   9e-12

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 42/99 (42%), Positives = 57/99 (57%)
 Frame = +1

Query: 1   VLVNGLCSKGRVDGAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXXQMKI 180
           VL+N   S+ R+DGAY+L ++ V K  +RP   TYK LI+                 MK 
Sbjct: 480 VLINAFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLLIEKLLEVRKLEEALNLLRLMKQ 539

Query: 181 HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNS 297
           H  PPF EPF  YIS+FG VDDA D+  AL ++++P+ S
Sbjct: 540 HNHPPFPEPFVQYISRFGTVDDAADFLKALSVKEYPSTS 578


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 39/98 (39%), Positives = 59/98 (60%)
 Frame = +1

Query: 1   VLVNGLCSKGRVDGAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXXQMKI 180
           VLV G  S+ ++DGAY+ ++E V K+ + P   TYK LI+                 MK 
Sbjct: 329 VLVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQATYKLLIEKLLQVRKLEEATDLLRLMKK 388

Query: 181 HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTN 294
           H +PPF EPF  YISKFG V+DA+++F  L ++++P++
Sbjct: 389 HNYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKEYPSS 426


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/99 (40%), Positives = 56/99 (56%)
 Frame = +1

Query: 1   VLVNGLCSKGRVDGAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXXQMKI 180
           VL+NG  S+ R+DGAY L++E V   ++ P   TYK +I                  MK 
Sbjct: 482 VLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLMKK 541

Query: 181 HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNS 297
             +PPF EPF +YISKFG V+DA ++  AL  +K+P+ S
Sbjct: 542 QNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKYPSQS 580


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/99 (38%), Positives = 56/99 (56%)
 Frame = +1

Query: 1   VLVNGLCSKGRVDGAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXXQMKI 180
           VL++G  ++ +++GAY L++E   K ++RP   TYK LI+N                MK 
Sbjct: 475 VLISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLMKK 534

Query: 181 HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNS 297
             +PPF EPF  YISKFG V DA D+   L  +++P+ S
Sbjct: 535 QNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPSVS 573


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 37/98 (37%), Positives = 53/98 (54%)
 Frame = +1

Query: 1   VLVNGLCSKGRVDGAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXXQMKI 180
           VL +G  S+ R++GAY LV E  +K  + P   TYK LI+                 MK 
Sbjct: 481 VLADGFLSQKRIEGAYELVAEISRKCRISPWQATYKKLIEKLLGVMKFEEALELLRLMKS 540

Query: 181 HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTN 294
           H +PP+  PF  YISKFG V+DA  +  AL ++ +P++
Sbjct: 541 HNYPPYHLPFVPYISKFGSVEDAEAFLKALSVKSYPSH 578