BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024060
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   100   2e-19
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...    93   2e-17
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    86   4e-15

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  100 bits (248), Expect = 2e-19
 Identities = 55/116 (47%), Positives = 64/116 (55%)
 Frame = -1

Query: 367 YKNLIQKLLGXXXXXXXXXXXXXXXXXXLPSYEEPFNNYISKFGTVDDANEYLTALRVKK 188
           YK +I KLLG                   P + EPF  YISKFGTV+DA E+L AL  KK
Sbjct: 516 YKLMINKLLGVRKLEEAINLLHLMKKQNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKK 575

Query: 187 YPPVLIYSHAIESFCKEGRESDARDLLDKCPPHIRGDAGILKLVTSPNLGTQSEKK 20
           YP    Y H  ESF +EGRES+A+DLL KCP HIR    I KL  S      +EK+
Sbjct: 576 YPSQSAYVHVFESFFQEGRESEAKDLLYKCPHHIRKHPDICKLFGSAKSEYATEKR 631


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 50/113 (44%), Positives = 64/113 (56%)
 Frame = -1

Query: 367 YKNLIQKLLGXXXXXXXXXXXXXXXXXXLPSYEEPFNNYISKFGTVDDANEYLTALRVKK 188
           YK LI+KLL                    P + EPF+ YISKFGTV+DA  +   L VK+
Sbjct: 363 YKLLIEKLLQVRKLEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKE 422

Query: 187 YPPVLIYSHAIESFCKEGRESDARDLLDKCPPHIRGDAGILKLVTSPNLGTQS 29
           YP  + Y   ++SF +EGR+S+ARDLL KCP HIR D  I KL  S   G ++
Sbjct: 423 YPSSVAYLRMLDSFLREGRDSEARDLLFKCPHHIRKDHKISKLFGSAKTGDKT 475


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 48/111 (43%), Positives = 57/111 (51%)
 Frame = -1

Query: 367 YKNLIQKLLGXXXXXXXXXXXXXXXXXXLPSYEEPFNNYISKFGTVDDANEYLTALRVKK 188
           YK LI+ LL                    P + EPF  YISKFGTV DA+++L  L  K+
Sbjct: 509 YKQLIKNLLEVRKLEEAIALLRLMKKQNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKE 568

Query: 187 YPPVLIYSHAIESFCKEGRESDARDLLDKCPPHIRGDAGILKLVTSPNLGT 35
           YP V  Y H   SF  EGR S+A+DLL KCP HIR    + KL  S    T
Sbjct: 569 YPSVSAYLHIFNSFFNEGRYSEAKDLLFKCPHHIRKHNEVCKLFGSAESNT 619


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 48/106 (45%), Positives = 58/106 (54%)
 Frame = -1

Query: 367 YKNLIQKLLGXXXXXXXXXXXXXXXXXXLPSYEEPFNNYISKFGTVDDANEYLTALRVKK 188
           YK LI+KLLG                   P Y  PF  YISKFG+V+DA  +L AL VK 
Sbjct: 515 YKKLIEKLLGVMKFEEALELLRLMKSHNYPPYHLPFVPYISKFGSVEDAEAFLKALSVKS 574

Query: 187 YPPVLIYSHAIESFCKEGRESDARDLLDKCPPHIRGDAGILKLVTS 50
           YP  ++Y    ES  +EGR S+A+DLL K P HIR  + I KL  S
Sbjct: 575 YPSHIVYVQVFESLFREGRLSEAKDLLYKTPHHIRTHSKICKLFGS 620


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 47/106 (44%), Positives = 59/106 (55%)
 Frame = -1

Query: 367 YKNLIQKLLGXXXXXXXXXXXXXXXXXXLPSYEEPFNNYISKFGTVDDANEYLTALRVKK 188
           YK LI+KLL                    P + EPF  YIS+FGTVDDA ++L AL VK+
Sbjct: 514 YKLLIEKLLEVRKLEEALNLLRLMKQHNHPPFPEPFVQYISRFGTVDDAADFLKALSVKE 573

Query: 187 YPPVLIYSHAIESFCKEGRESDARDLLDKCPPHIRGDAGILKLVTS 50
           YP    Y +  +SF + GR S+A+DLL KCP HIR    I +L  S
Sbjct: 574 YPSTSAYLNVFQSFFRAGRHSEAKDLLFKCPHHIRKHPKISELFGS 619