BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024047
         (532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    73   3e-15
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    64   3e-15
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                64   2e-14
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    65   2e-14
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    64   2e-14

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 73.2 bits (178), Expect(2) = 3e-15
 Identities = 28/70 (40%), Positives = 48/70 (68%)
 Frame = +3

Query: 177  PDCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNL 356
            PD +   A I+W   C    EGGLGL+ L++ NE ++++  W++L+ +D++W +WV+K+L
Sbjct: 998  PDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHL 1057

Query: 357  IKKCIFWQLK 386
            I+K  FW +K
Sbjct: 1058 IRKETFWSVK 1067



 Score = 33.5 bits (75), Expect(2) = 3e-15
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 406  WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPWHP 513
            W WR +L  R +A      ++ +G  TSFW D W P
Sbjct: 1075 WLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCP 1110


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 63.9 bits (154), Expect(2) = 3e-15
 Identities = 23/69 (33%), Positives = 44/69 (63%)
 Frame = +3

Query: 180  DCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNLI 359
            + + + A ISW   C    EGGLGLR L++ N+   ++  WK+++  +++W +WV ++L+
Sbjct: 852  EMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLL 911

Query: 360  KKCIFWQLK 386
            +   FW++K
Sbjct: 912  RNASFWEVK 920



 Score = 42.4 bits (98), Expect(2) = 3e-15
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 361  KNASFGN*KYQMIV-PWNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507
            +NASF   K  +    W W+ LL  R+ A  +   ++GNG++TSFW D W
Sbjct: 912  RNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNW 961


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 64.3 bits (155), Expect(2) = 2e-14
 Identities = 25/63 (39%), Positives = 41/63 (65%)
 Frame = +3

Query: 198 ALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNLIKKCIFW 377
           A ISWD  C    EGGLGLR L++ N+ + ++  W++++  +++W +WV + LI+K   W
Sbjct: 505 AKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIW 564

Query: 378 QLK 386
            LK
Sbjct: 565 SLK 567



 Score = 39.7 bits (91), Expect(2) = 2e-14
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507
           W WR +L  R  A      ++GNGE  SFW D W
Sbjct: 575 WIWRKILKIRDVAKSFSRVEVGNGESASFWYDHW 608


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 64.7 bits (156), Expect(2) = 2e-14
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +3

Query: 177 PDCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNL 356
           P+  +  A +SWD  C    EGGLGLR L + N  ++++  W++ +  D++W +W   NL
Sbjct: 256 PELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNL 315

Query: 357 IKKCIFWQLKVPN 395
           +K+  FW L  PN
Sbjct: 316 LKQESFWSL-TPN 327



 Score = 39.3 bits (90), Expect(2) = 2e-14
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507
           W W+ +L  R+ A      ++ NG RTSFW D W
Sbjct: 333 WMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNW 366


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 63.5 bits (153), Expect(2) = 2e-14
 Identities = 23/69 (33%), Positives = 43/69 (62%)
 Frame = +3

Query: 180 DCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNLI 359
           + + S A I+W   C    EGGLGLR L++ N+   ++  W++++  D++W +W+  +L+
Sbjct: 101 ELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLL 160

Query: 360 KKCIFWQLK 386
           KK  FW ++
Sbjct: 161 KKVSFWAVR 169



 Score = 40.0 bits (92), Expect(2) = 2e-14
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507
           W WR +L  R  A  +   +I NG RTSFW D W
Sbjct: 177 WMWRKILKFRDIARTLCKVEINNGARTSFWYDDW 210