BLASTX nr result
ID: Coptis25_contig00024047
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024047 (532 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 73 3e-15 dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 64 3e-15 gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 64 2e-14 gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 65 2e-14 emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 64 2e-14 >gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1352 Score = 73.2 bits (178), Expect(2) = 3e-15 Identities = 28/70 (40%), Positives = 48/70 (68%) Frame = +3 Query: 177 PDCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNL 356 PD + A I+W C EGGLGL+ L++ NE ++++ W++L+ +D++W +WV+K+L Sbjct: 998 PDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHL 1057 Query: 357 IKKCIFWQLK 386 I+K FW +K Sbjct: 1058 IRKETFWSVK 1067 Score = 33.5 bits (75), Expect(2) = 3e-15 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPWHP 513 W WR +L R +A ++ +G TSFW D W P Sbjct: 1075 WLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCP 1110 >dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Score = 63.9 bits (154), Expect(2) = 3e-15 Identities = 23/69 (33%), Positives = 44/69 (63%) Frame = +3 Query: 180 DCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNLI 359 + + + A ISW C EGGLGLR L++ N+ ++ WK+++ +++W +WV ++L+ Sbjct: 852 EMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLL 911 Query: 360 KKCIFWQLK 386 + FW++K Sbjct: 912 RNASFWEVK 920 Score = 42.4 bits (98), Expect(2) = 3e-15 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +1 Query: 361 KNASFGN*KYQMIV-PWNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507 +NASF K + W W+ LL R+ A + ++GNG++TSFW D W Sbjct: 912 RNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNW 961 >gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] Length = 872 Score = 64.3 bits (155), Expect(2) = 2e-14 Identities = 25/63 (39%), Positives = 41/63 (65%) Frame = +3 Query: 198 ALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNLIKKCIFW 377 A ISWD C EGGLGLR L++ N+ + ++ W++++ +++W +WV + LI+K W Sbjct: 505 AKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIW 564 Query: 378 QLK 386 LK Sbjct: 565 SLK 567 Score = 39.7 bits (91), Expect(2) = 2e-14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +1 Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507 W WR +L R A ++GNGE SFW D W Sbjct: 575 WIWRKILKIRDVAKSFSRVEVGNGESASFWYDHW 608 >gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana] Length = 629 Score = 64.7 bits (156), Expect(2) = 2e-14 Identities = 27/73 (36%), Positives = 43/73 (58%) Frame = +3 Query: 177 PDCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNL 356 P+ + A +SWD C EGGLGLR L + N ++++ W++ + D++W +W NL Sbjct: 256 PELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNL 315 Query: 357 IKKCIFWQLKVPN 395 +K+ FW L PN Sbjct: 316 LKQESFWSL-TPN 327 Score = 39.3 bits (90), Expect(2) = 2e-14 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507 W W+ +L R+ A ++ NG RTSFW D W Sbjct: 333 WMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNW 366 >emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1| putative protein [Arabidopsis thaliana] Length = 473 Score = 63.5 bits (153), Expect(2) = 2e-14 Identities = 23/69 (33%), Positives = 43/69 (62%) Frame = +3 Query: 180 DCDQSHALISWDASCSSYYEGGLGLRELEKVNEAAIMRQTWKLLTKKDTVWAEWVHKNLI 359 + + S A I+W C EGGLGLR L++ N+ ++ W++++ D++W +W+ +L+ Sbjct: 101 ELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLL 160 Query: 360 KKCIFWQLK 386 KK FW ++ Sbjct: 161 KKVSFWAVR 169 Score = 40.0 bits (92), Expect(2) = 2e-14 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +1 Query: 406 WNWRNLLNTRKEASDIVMHQIGNGERTSFWLDPW 507 W WR +L R A + +I NG RTSFW D W Sbjct: 177 WMWRKILKFRDIARTLCKVEINNGARTSFWYDDW 210