BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024041
         (816 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520694.1| shikimate dehydrogenase, putative [Ricinus c...   190   5e-62
ref|XP_002320370.1| dehydroquinate dehydratase/ shikimate dehydr...   186   7e-45
ref|XP_002320371.1| predicted protein [Populus trichocarpa] gi|2...   181   2e-43
ref|XP_002884573.1| EMB3004/MEE32 [Arabidopsis lyrata subsp. lyr...   140   1e-42
ref|NP_187286.1| Shikimate dehydrogenase [Arabidopsis thaliana] ...   135   3e-41

>ref|XP_002520694.1| shikimate dehydrogenase, putative [Ricinus communis]
           gi|223540079|gb|EEF41656.1| shikimate dehydrogenase,
           putative [Ricinus communis]
          Length = 515

 Score =  190 bits (483), Expect(2) = 5e-62
 Identities = 101/171 (59%), Positives = 123/171 (71%)
 Frame = -1

Query: 693 AITASRSANGGPSETSPLSXXXXXXXXXXXXXXXXXXXXXXXXXXLVIFNRNYARAKALA 514
           A+   R  N G  +TSPL+                          +V+FNRN+ RAK+LA
Sbjct: 345 ALRERRPTNRGALDTSPLAGKTFVLIGAGGAGRALAFGASSRGARVVVFNRNFERAKSLA 404

Query: 513 LAVSGEALPYEEINGFCREKGMILANATAVGMQPNTDQTPVAKEALGAYELVFDSVYTPR 334
            AVSGEALPY+ ++ F RE  MILANA+AVGM+PNT Q+PV+KEAL +YELVFD+VYTPR
Sbjct: 405 NAVSGEALPYKALDRFQRENDMILANASAVGMEPNTHQSPVSKEALKSYELVFDAVYTPR 464

Query: 333 NTRLLREAEEVGAIVVSGVEMFIRQAIGQFNLFTDGKAPEEFMRKVVLTRF 181
           NTRLL+EA+EVGA+VVSGVEMFIRQA+GQF LFT G APE FMRK+VL +F
Sbjct: 465 NTRLLQEAKEVGAVVVSGVEMFIRQALGQFRLFTGGLAPEAFMRKLVLEQF 515



 Score = 74.3 bits (181), Expect(2) = 5e-62
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = -3

Query: 814 SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALR 707
           SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALR
Sbjct: 312 SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALR 347


>ref|XP_002320370.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus
           trichocarpa] gi|222861143|gb|EEE98685.1| dehydroquinate
           dehydratase/ shikimate dehydrogenase [Populus
           trichocarpa]
          Length = 504

 Score =  186 bits (471), Expect = 7e-45
 Identities = 93/125 (74%), Positives = 109/125 (87%)
 Frame = -1

Query: 555 VIFNRNYARAKALALAVSGEALPYEEINGFCREKGMILANATAVGMQPNTDQTPVAKEAL 376
           +IFNRNY RA+ALA AVSGEALPYE ++ F    GMILANA+A+GM+PN+DQ+PV+KE L
Sbjct: 380 IIFNRNYERARALAKAVSGEALPYESLDRFRPVNGMILANASAIGMEPNSDQSPVSKEIL 439

Query: 375 GAYELVFDSVYTPRNTRLLREAEEVGAIVVSGVEMFIRQAIGQFNLFTDGKAPEEFMRKV 196
            A ELVFD+VYTPRNTRLLREA+EVGA+VVSGVEMFIRQA+GQF LFT G APE FMRK+
Sbjct: 440 KACELVFDAVYTPRNTRLLREAKEVGAVVVSGVEMFIRQALGQFRLFTGGLAPEAFMRKL 499

Query: 195 VLTRF 181
           VL +F
Sbjct: 500 VLEQF 504



 Score = 69.7 bits (169), Expect = 7e-10
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = -3

Query: 814 SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDAL 710
           SIGAVNTIVRRPTDGKLVGYNTDC+ASI+AIEDAL
Sbjct: 312 SIGAVNTIVRRPTDGKLVGYNTDCDASISAIEDAL 346


>ref|XP_002320371.1| predicted protein [Populus trichocarpa] gi|222861144|gb|EEE98686.1|
           predicted protein [Populus trichocarpa]
          Length = 337

 Score =  181 bits (459), Expect = 2e-43
 Identities = 91/125 (72%), Positives = 108/125 (86%)
 Frame = -1

Query: 555 VIFNRNYARAKALALAVSGEALPYEEINGFCREKGMILANATAVGMQPNTDQTPVAKEAL 376
           +IFNRNY RA+ALA AVSGEALPYE ++ F    GMILANA+A+GM+PN+DQ+PV+KE L
Sbjct: 213 IIFNRNYERARALAKAVSGEALPYESLDRFRPVNGMILANASAIGMEPNSDQSPVSKETL 272

Query: 375 GAYELVFDSVYTPRNTRLLREAEEVGAIVVSGVEMFIRQAIGQFNLFTDGKAPEEFMRKV 196
            A ELVFD+VYTPRNTRLL+EA+EV A+VVSGVEMFIRQA+GQF LFT G APE FMRK+
Sbjct: 273 KACELVFDAVYTPRNTRLLQEAKEVVAVVVSGVEMFIRQALGQFRLFTGGLAPEAFMRKL 332

Query: 195 VLTRF 181
           VL +F
Sbjct: 333 VLEQF 337



 Score = 69.7 bits (169), Expect = 7e-10
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = -3

Query: 814 SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDAL 710
           SIGAVNTIVRRPTDGKLVGYNTDC+ASI+AIEDAL
Sbjct: 137 SIGAVNTIVRRPTDGKLVGYNTDCDASISAIEDAL 171


>ref|XP_002884573.1| EMB3004/MEE32 [Arabidopsis lyrata subsp. lyrata]
           gi|297330413|gb|EFH60832.1| EMB3004/MEE32 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 603

 Score =  140 bits (352), Expect(2) = 1e-42
 Identities = 77/163 (47%), Positives = 98/163 (60%)
 Frame = -1

Query: 681 SRSANGGPSETSPLSXXXXXXXXXXXXXXXXXXXXXXXXXXLVIFNRNYARAKALALAVS 502
           S   + GPS +SPL+                          +VI NR Y RA  LA A+ 
Sbjct: 438 SGDPSSGPSSSSPLAGKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG 497

Query: 501 GEALPYEEINGFCREKGMILANATAVGMQPNTDQTPVAKEALGAYELVFDSVYTPRNTRL 322
           G AL   +++ F  E GM+LAN T++GMQPN D+TP++K AL  Y LVFD+VYTPR TRL
Sbjct: 498 GRALSLTDLDNFHPEDGMVLANTTSMGMQPNVDETPISKHALKHYALVFDAVYTPRITRL 557

Query: 321 LREAEEVGAIVVSGVEMFIRQAIGQFNLFTDGKAPEEFMRKVV 193
           LREAEE GAI VSG EMF+RQA  QF +FT   AP+E   +++
Sbjct: 558 LREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 600



 Score = 59.7 bits (143), Expect(2) = 1e-42
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -3

Query: 814 SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALR 707
           SIGAVNTI+RR +DGKL+GYNTDC  SI+AIED LR
Sbjct: 401 SIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLR 436


>ref|NP_187286.1| Shikimate dehydrogenase [Arabidopsis thaliana]
           gi|75207269|sp|Q9SQT8.1|DHQSD_ARATH RecName:
           Full=Bifunctional 3-dehydroquinate dehydratase/shikimate
           dehydrogenase, chloroplastic; Short=DHQ-SDH protein;
           AltName: Full=DHQase-SORase; AltName: Full=Protein
           EMBRYO DEFECTIVE 3004; Includes: RecName:
           Full=Dehydroquinate dehydratase; Short=DHQ; Includes:
           RecName: Full=Shikimate dehydrogenase; Short=SDH; Flags:
           Precursor gi|6437552|gb|AAF08579.1|AC011623_12 putative
           dehydroquinase shikimate dehydrogenase [Arabidopsis
           thaliana] gi|332640860|gb|AEE74381.1| Shikimate
           dehydrogenase [Arabidopsis thaliana]
          Length = 603

 Score =  135 bits (341), Expect(2) = 3e-41
 Identities = 74/166 (44%), Positives = 101/166 (60%)
 Frame = -1

Query: 690 ITASRSANGGPSETSPLSXXXXXXXXXXXXXXXXXXXXXXXXXXLVIFNRNYARAKALAL 511
           + +S   +  PS +SPL+                          +VI NR Y RA  LA 
Sbjct: 435 LRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAE 494

Query: 510 AVSGEALPYEEINGFCREKGMILANATAVGMQPNTDQTPVAKEALGAYELVFDSVYTPRN 331
           A+ G+AL   +++ +  E GM+LAN T++GMQPN ++TP++K+AL  Y LVFD+VYTPR 
Sbjct: 495 AIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI 554

Query: 330 TRLLREAEEVGAIVVSGVEMFIRQAIGQFNLFTDGKAPEEFMRKVV 193
           TRLLREAEE GAI VSG EMF+RQA  QF +FT   AP+E   +++
Sbjct: 555 TRLLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 600



 Score = 59.7 bits (143), Expect(2) = 3e-41
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -3

Query: 814 SIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALR 707
           SIGAVNTI+RR +DGKL+GYNTDC  SI+AIED LR
Sbjct: 401 SIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLR 436