BLASTX nr result
ID: Coptis25_contig00024028
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00024028 (1489 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 is... 608 e-171 emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera] 606 e-171 ref|XP_002520330.1| replication factor C / DNA polymerase III ga... 597 e-168 ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|2... 588 e-165 ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [V... 587 e-165 >ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera] gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera] Length = 341 Score = 608 bits (1568), Expect = e-171 Identities = 302/340 (88%), Positives = 324/340 (95%) Frame = -2 Query: 1431 MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 1252 MAPV+ S+QPWVEKYRPKQVKDVAHQDEV+RVLTNTLETTNCPHMLFYGPPGTGKTTTAL Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60 Query: 1251 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 1072 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG+ RQGGYPCPPYKIII Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120 Query: 1071 LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 892 LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPLSE+IM+ Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180 Query: 891 SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELISVSGVI 712 SRILHICKEE LNLD EALSTLSSISQGDLRRAITYLQGAARLFGS +S+K+LISVSGV+ Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240 Query: 711 PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 532 PQ VVQ LF+ACKSG+F+SANKEV NVIAEGYPVSQM QLF+VVVE+ DISDEQKARIC Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299 Query: 531 RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 412 ++L EADKCL+DGADEYLQL+DVAS M+ALCNMPEEF + Sbjct: 300 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPH 339 >emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera] Length = 341 Score = 606 bits (1563), Expect = e-171 Identities = 301/340 (88%), Positives = 323/340 (95%) Frame = -2 Query: 1431 MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 1252 MAPV+ S+QPWVEKYRPKQVKDVAHQDEV+RVLTNTLETTNCPHMLFYGPPGTGKTTTAL Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60 Query: 1251 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 1072 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAVG+ RQGGYPCPPYKIII Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120 Query: 1071 LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 892 LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPLSE+IM+ Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180 Query: 891 SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELISVSGVI 712 SRILHICKEE LNLD EALSTLSSISQGDLRRAITYLQGAARLFGS +S+K+LISVSGV+ Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240 Query: 711 PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 532 PQ VVQ LF+ACKSG+F+SANKEV NVIAEGYPVSQM QLF+VVVE+ DISDEQKARIC Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299 Query: 531 RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 412 ++L EADKCL+DGADEYLQL+DVAS M+ALCNMPEEF + Sbjct: 300 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPH 339 >ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 342 Score = 597 bits (1540), Expect = e-168 Identities = 289/340 (85%), Positives = 322/340 (94%) Frame = -2 Query: 1431 MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 1252 MAP++ S+QPWVEKYRPKQVKDVAHQ+EV+RVLTNTLET+NCPHMLFYGPPGTGKTTTAL Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60 Query: 1251 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 1072 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK+FAAVAVG+ R GGYPCPPYKIII Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120 Query: 1071 LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 892 LDEADSMTEDAQNALRRTMETYSKVTRFF++CNYISRIIEPLASRCAKFRFKPLSE+IM+ Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180 Query: 891 SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELISVSGVI 712 SR+LHIC+EEGLNLD EALSTLS +SQGDLRRAITYLQGAARL+GST+S+K+LISVSGVI Sbjct: 181 SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240 Query: 711 PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 532 PQE V L++AC+SG+F+ ANKEV N+IAEGYPVSQM QL EVVVE++DISDEQKA+IC Sbjct: 241 PQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQIC 300 Query: 531 RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 412 + LG ADKCL+DGADEYLQL+DVAS TM+ALCNMP+EF Y Sbjct: 301 KSLGAADKCLVDGADEYLQLLDVASNTMRALCNMPQEFPY 340 >ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa] Length = 342 Score = 588 bits (1515), Expect = e-165 Identities = 285/341 (83%), Positives = 319/341 (93%) Frame = -2 Query: 1431 MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 1252 MAP++ S+Q WVEKYRPKQ+KDVAHQDEV+RVLTNTLET NCPHMLFYGPPGTGKTTTAL Sbjct: 1 MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60 Query: 1251 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 1072 AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG+ RQG YPCPPYKIII Sbjct: 61 AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120 Query: 1071 LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 892 LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPL E+IM+ Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS 180 Query: 891 SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELISVSGVI 712 +RILHIC EEGL LD EALSTLSS+SQGDLRRAITYLQGAARLFGS++S+K+LISVSG I Sbjct: 181 NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI 240 Query: 711 PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 532 P+EV + +++ACK+G+F+ ANKEV +VIAEGYPVSQM +QLFEVVVE +DISDEQKARIC Sbjct: 241 PREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARIC 300 Query: 531 RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSYN 409 + L ADKCL+DGADEYLQL+DV S TM++LCNMP+EFSY+ Sbjct: 301 KSLATADKCLVDGADEYLQLLDVVSNTMRSLCNMPQEFSYD 341 >ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera] Length = 334 Score = 587 bits (1513), Expect = e-165 Identities = 295/340 (86%), Positives = 317/340 (93%) Frame = -2 Query: 1431 MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 1252 MAPV+ S+QPWVEKYRPKQVKDVAHQDEV+RVLTNTLETTNCPHMLFYGPPGTGKTTTAL Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60 Query: 1251 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 1072 AIAHQLFG VLELNASDDRGINVVRTKIKDFAAVAVG+ RQGGYPCPPYKIII Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113 Query: 1071 LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 892 LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPLSE+IM+ Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 173 Query: 891 SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELISVSGVI 712 SRILHICKEE LNLD EALSTLSSISQGDLRRAITYLQGAARLFGS +S+K+LISVSGV+ Sbjct: 174 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 233 Query: 711 PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 532 PQ VVQ LF+ACKSG+F+SANKEV NVIAEGYPVSQM QLF+VVVE+ DISDEQKARIC Sbjct: 234 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 292 Query: 531 RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 412 ++L EADKCL+DGADEYLQL+DVAS M+ALCNMPEEF + Sbjct: 293 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPH 332