BLASTX nr result

ID: Coptis25_contig00023971 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023971
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517246.1| chromatin assembly factor I P60 subunit, put...   261   3e-68
ref|XP_002274967.1| PREDICTED: chromatin assembly factor 1 subun...   260   9e-68
ref|XP_003525118.1| PREDICTED: chromatin assembly factor 1 subun...   255   3e-66
ref|XP_004148649.1| PREDICTED: chromatin assembly factor 1 subun...   250   7e-65
gb|AEL99232.1| transducin/WD40 domain-containing protein, partia...   249   2e-64

>ref|XP_002517246.1| chromatin assembly factor I P60 subunit, putative [Ricinus
           communis] gi|223543617|gb|EEF45146.1| chromatin assembly
           factor I P60 subunit, putative [Ricinus communis]
          Length = 455

 Score =  261 bits (668), Expect = 3e-68
 Identities = 129/161 (80%), Positives = 141/161 (87%), Gaps = 1/161 (0%)
 Frame = +3

Query: 3   SKIHLFHDETLPSFFRRLAWSPDGSFLVAPAGSYKLS-ASDSLNTAYIFLRKDLSRPALQ 179
           SK HLFHDETLPSFFRRLAWSPDGSFLV PAGSYK S ASD++NT Y+F RKD SRPAL 
Sbjct: 216 SKNHLFHDETLPSFFRRLAWSPDGSFLVVPAGSYKTSPASDTVNTTYVFSRKDFSRPALL 275

Query: 180 LPTANKPIVAVRFCPVVFNLRGSNSGKFFNLPHRFIFAVATLNSLYIYDTESVPPIAIFA 359
           LP A+KP+VAVRFCP+ F+LR S+S  FF LP+R IFAVATLNSLYIYDTES PPIAI A
Sbjct: 276 LPGASKPVVAVRFCPMAFSLRESHSAGFFKLPYRLIFAVATLNSLYIYDTESAPPIAILA 335

Query: 360 GLHYAAITDIAWSSNAKYVALSSQDGYCTLVEFESGELGSP 482
           GLHYAAITDIAWSSNA+Y+A+SSQDGYCTLVEFE  ELG P
Sbjct: 336 GLHYAAITDIAWSSNAQYLAVSSQDGYCTLVEFEINELGLP 376


>ref|XP_002274967.1| PREDICTED: chromatin assembly factor 1 subunit B [Vitis vinifera]
           gi|296088566|emb|CBI37557.3| unnamed protein product
           [Vitis vinifera]
          Length = 456

 Score =  260 bits (664), Expect = 9e-68
 Identities = 125/160 (78%), Positives = 142/160 (88%), Gaps = 1/160 (0%)
 Frame = +3

Query: 6   KIHLFHDETLPSFFRRLAWSPDGSFLVAPAGSYKLS-ASDSLNTAYIFLRKDLSRPALQL 182
           K HLFHDETLPSFFRRL WSPDGSFL+ PAGSYK S AS  +NTAY+F RKDLSRPALQL
Sbjct: 218 KSHLFHDETLPSFFRRLKWSPDGSFLLVPAGSYKFSPASGPVNTAYVFSRKDLSRPALQL 277

Query: 183 PTANKPIVAVRFCPVVFNLRGSNSGKFFNLPHRFIFAVATLNSLYIYDTESVPPIAIFAG 362
           P ++KP++AVRFCP+ F+L+GSNS  FF LP+R IFAVA+LNSLYIYDTES+PPIAI AG
Sbjct: 278 PGSSKPVIAVRFCPMAFHLQGSNSAGFFKLPYRLIFAVASLNSLYIYDTESIPPIAILAG 337

Query: 363 LHYAAITDIAWSSNAKYVALSSQDGYCTLVEFESGELGSP 482
           LHYAAITDIAWS + KY+A+SSQDGY TLVEFE+GELGSP
Sbjct: 338 LHYAAITDIAWSHDGKYLAISSQDGYSTLVEFENGELGSP 377


>ref|XP_003525118.1| PREDICTED: chromatin assembly factor 1 subunit B-like [Glycine max]
          Length = 585

 Score =  255 bits (651), Expect = 3e-66
 Identities = 123/161 (76%), Positives = 141/161 (87%), Gaps = 1/161 (0%)
 Frame = +3

Query: 3   SKIHLFHDETLPSFFRRLAWSPDGSFLVAPAGSYKLS-ASDSLNTAYIFLRKDLSRPALQ 179
           +K HLFHDETLPSFFRRLAWSPDGSFL+ PAGSYK+S AS+S+N AYIF RKDLSRPA+Q
Sbjct: 216 TKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISTASESVNAAYIFSRKDLSRPAIQ 275

Query: 180 LPTANKPIVAVRFCPVVFNLRGSNSGKFFNLPHRFIFAVATLNSLYIYDTESVPPIAIFA 359
           LP A+K +VAVRFCP+ F LRG++S   F LP+R IFAVATLNSLYIYDTES  PIA+ A
Sbjct: 276 LPCASKAVVAVRFCPIFFKLRGTHSAGLFKLPYRIIFAVATLNSLYIYDTESTSPIAVLA 335

Query: 360 GLHYAAITDIAWSSNAKYVALSSQDGYCTLVEFESGELGSP 482
           GLHYAAITDI WSS+A Y+ALSSQDG+C+LVEFE+ ELGSP
Sbjct: 336 GLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSP 376


>ref|XP_004148649.1| PREDICTED: chromatin assembly factor 1 subunit FAS2-like [Cucumis
           sativus] gi|449530800|ref|XP_004172380.1| PREDICTED:
           chromatin assembly factor 1 subunit FAS2-like [Cucumis
           sativus]
          Length = 477

 Score =  250 bits (639), Expect = 7e-65
 Identities = 123/158 (77%), Positives = 137/158 (86%), Gaps = 1/158 (0%)
 Frame = +3

Query: 12  HLFHDETLPSFFRRLAWSPDGSFLVAPAGSYKLS-ASDSLNTAYIFLRKDLSRPALQLPT 188
           HLFHDETLPSFFRRLAWSPDGSFL+ PAG  K+S AS+ +NTAYIF RKDLSRPA+QLP 
Sbjct: 220 HLFHDETLPSFFRRLAWSPDGSFLLVPAGISKMSPASEPVNTAYIFSRKDLSRPAIQLPG 279

Query: 189 ANKPIVAVRFCPVVFNLRGSNSGKFFNLPHRFIFAVATLNSLYIYDTESVPPIAIFAGLH 368
           A+KP+VAV FCP +F LRG NS  FF LPHR IFAVATLNSLYIYDTES  P+AI AGLH
Sbjct: 280 ASKPVVAVCFCPKLFKLRGLNSAGFFKLPHRVIFAVATLNSLYIYDTESAVPLAIMAGLH 339

Query: 369 YAAITDIAWSSNAKYVALSSQDGYCTLVEFESGELGSP 482
           YAAITD+AWS++A Y+ALSSQDGYCTLVEFE+ ELG P
Sbjct: 340 YAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGLP 377


>gb|AEL99232.1| transducin/WD40 domain-containing protein, partial [Silene
           latifolia]
          Length = 231

 Score =  249 bits (635), Expect = 2e-64
 Identities = 121/161 (75%), Positives = 138/161 (85%), Gaps = 1/161 (0%)
 Frame = +3

Query: 3   SKIHLFHDETLPSFFRRLAWSPDGSFLVAPAGSYKLS-ASDSLNTAYIFLRKDLSRPALQ 179
           SKIHLFHDET    FRRLAWSPDGSFL+ PAGS+K+S AS+ +NTAY+F RKDLSRPAL+
Sbjct: 67  SKIHLFHDETYHHSFRRLAWSPDGSFLLVPAGSFKVSLASEPVNTAYVFSRKDLSRPALR 126

Query: 180 LPTANKPIVAVRFCPVVFNLRGSNSGKFFNLPHRFIFAVATLNSLYIYDTESVPPIAIFA 359
           LP A+KP++AVRFCP+ F+LRGSNS  F  LP+R IFAVATLNSLYIYDTE V P+A+ A
Sbjct: 127 LPGASKPVIAVRFCPLAFSLRGSNSPGFSKLPYRLIFAVATLNSLYIYDTECVAPLAVLA 186

Query: 360 GLHYAAITDIAWSSNAKYVALSSQDGYCTLVEFESGELGSP 482
           GLHYAAITDI WS N KY+ALSSQDGYCTLVEF + ELGSP
Sbjct: 187 GLHYAAITDITWSPNGKYLALSSQDGYCTLVEFHNDELGSP 227


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