BLASTX nr result

ID: Coptis25_contig00023961 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023961
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521947.1| hypothetical protein RCOM_0607680 [Ricinus c...    66   3e-09
ref|XP_002319088.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08

>ref|XP_002521947.1| hypothetical protein RCOM_0607680 [Ricinus communis]
           gi|223538751|gb|EEF40351.1| hypothetical protein
           RCOM_0607680 [Ricinus communis]
          Length = 1162

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
 Frame = -2

Query: 489 TNTLAREINSHKKEMAARFVQPVPRTIVSDTLLNASVEVLVPNKLID*DT-IPPSLLVHH 313
           TN     IN+ K+++A   VQ  PR I       +  + LV  KLID  T +   +L   
Sbjct: 241 TNARGHAINT-KQDIAVGCVQTEPRII-------SLHDDLVSEKLIDSVTALQTPILASQ 292

Query: 312 EQHDIGELHHMTSSASGMATGHGLEELNWQQLEQKSHTPAVLDLISLDDVP 160
            Q D+ E H +TS +  ++ GHGLEE+ WQQ + KS++ A  +LISLD++P
Sbjct: 293 IQSDLVEFHGVTSKSPSVSLGHGLEEVQWQQADGKSNSSAFPELISLDEIP 343


>ref|XP_002319088.1| predicted protein [Populus trichocarpa] gi|222857464|gb|EEE95011.1|
           predicted protein [Populus trichocarpa]
          Length = 954

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = -2

Query: 456 KKEMAARFVQPVPRTIVSDTLLNASVEVLVPNKLID*DTIP-PSLLVHHEQHDIGELHHM 280
           +K+++  +VQP PRTI+        V+     KLID  + P PS+L      D+ + H++
Sbjct: 254 RKDISVGYVQPEPRTIIL-------VDDSASEKLIDPVSAPEPSILTSKVLSDVIQSHNV 306

Query: 279 TSSASGMATGHGLEELNWQQLEQKSHTPAVLDLISLDDVPSQS 151
           T++AS    GH LEEL WQQ + K+++ A+ + +S D +P  S
Sbjct: 307 TATASAFPIGHDLEELKWQQADWKANSFALPEFVSHDKLPPSS 349


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