BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023937
         (432 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             191   4e-47
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   177   1e-42
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             175   4e-42
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                172   2e-41
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   158   4e-37

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  191 bits (486), Expect = 4e-47
 Identities = 87/140 (62%), Positives = 113/140 (80%)
 Frame = +3

Query: 3    FRILRLYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPAQIRALVEMPSPQDVKEVQRL 182
            F +L  Y +KLNP KCTFGVT+G+FLGY+VT RGIEANP QIRA++E+PSP++ +EVQRL
Sbjct: 999  FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058

Query: 183  AGRVAALNRFISKSSDKCRPLYRLLRNTLDFEWTPECERAFQELKDYLGKAPMLSRPEQG 362
             GR+AALNRFIS+S+DKC P Y LL+    F+W  + E AF++LKDYL   P+L +PE G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118

Query: 363  EKLYLYLGVTEYAISSVLVR 422
            E LYLY+ V+++A+SSVLVR
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVR 1138


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  177 bits (448), Expect = 1e-42
 Identities = 84/140 (60%), Positives = 106/140 (75%)
 Frame = +3

Query: 3    FRILRLYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPAQIRALVEMPSPQDVKEVQRL 182
            F IL  Y +KLNP KCTFGV +G+FLGYIVT RGIEANP QI A + MPSP++ KEVQRL
Sbjct: 639  FAILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRL 698

Query: 183  AGRVAALNRFISKSSDKCRPLYRLLRNTLDFEWTPECERAFQELKDYLGKAPMLSRPEQG 362
             GR+AALNRFIS+S+DK  P Y++L+   +F W  +CE AF +LK YL   P+L +PE  
Sbjct: 699  TGRIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELD 758

Query: 363  EKLYLYLGVTEYAISSVLVR 422
            EKLYLY+ V+ +A+S VL+R
Sbjct: 759  EKLYLYVSVSNHAVSGVLIR 778


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  175 bits (443), Expect = 4e-42
 Identities = 85/140 (60%), Positives = 105/140 (75%)
 Frame = +3

Query: 3   FRILRLYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPAQIRALVEMPSPQDVKEVQRL 182
           F IL  Y +KLNP KCTFGV +G+FLGYIVT RGIEAN  QI A + MPSP++ KEVQRL
Sbjct: 196 FGILNKYQMKLNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRL 255

Query: 183 AGRVAALNRFISKSSDKCRPLYRLLRNTLDFEWTPECERAFQELKDYLGKAPMLSRPEQG 362
            GR+AALNRFIS+S+DK  P Y++L+    F W  +CE AF +LK YL   P+LS+PE  
Sbjct: 256 TGRIAALNRFISRSTDKSLPFYQILKGNKGFLWDEKCEEAFGQLKAYLTTPPILSKPEVD 315

Query: 363 EKLYLYLGVTEYAISSVLVR 422
           EKLYLY+ V+ +A+S VLVR
Sbjct: 316 EKLYLYVSVSNHAVSGVLVR 335


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  172 bits (437), Expect = 2e-41
 Identities = 81/140 (57%), Positives = 105/140 (75%)
 Frame = +3

Query: 3   FRILRLYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPAQIRALVEMPSPQDVKEVQRL 182
           F +LR + L+LN  KC+FGV +GKFLGY++THRGIE NP QI+A++E+  P++ KEVQ+L
Sbjct: 268 FSVLRKHKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQKL 327

Query: 183 AGRVAALNRFISKSSDKCRPLYRLLRNTLDFEWTPECERAFQELKDYLGKAPMLSRPEQG 362
           AG  A LNRFIS+S+D+CRP YRLL    DF WT EC  AF++L+ YL    +LSRPE+ 
Sbjct: 328 AGMFAVLNRFISRSADRCRPFYRLLHKWKDFLWTDECNLAFEDLRQYLANPLILSRPEKK 387

Query: 363 EKLYLYLGVTEYAISSVLVR 422
           E LY YL V  YA+S VL+R
Sbjct: 388 EVLYAYLAVMNYAVSLVLIR 407


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  158 bits (400), Expect = 4e-37
 Identities = 77/140 (55%), Positives = 99/140 (70%)
 Frame = +3

Query: 3    FRILRLYNLKLNPEKCTFGVTTGKFLGYIVTHRGIEANPAQIRALVEMPSPQDVKEVQRL 182
            F++L  YN+KLNP KCTFGVT+G+FLGY+VT RGIEANP QI A++++PSP++ +EVQRL
Sbjct: 957  FQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRL 1016

Query: 183  AGRVAALNRFISKSSDKCRPLYRLLRNTLDFEWTPECERAFQELKDYLGKAPMLSRPEQG 362
             GR+AALNRFIS+S+DKC P Y+LLR    FEW  +C                    E+G
Sbjct: 1017 IGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKC--------------------EEG 1056

Query: 363  EKLYLYLGVTEYAISSVLVR 422
            E LYLY+ V+  A+S VLVR
Sbjct: 1057 ETLYLYIAVSTSAVSGVLVR 1076